7000000082: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159207311

Overview

Basic Information

• IMG/M Taxon OID: 7000000082
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052558 | Ga0031042
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159207311
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75678192
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS017304_Baylor_scaffold_3012	All Organisms → Viruses	17804
SRS017304_Baylor_scaffold_30367	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	33949
SRS017304_Baylor_scaffold_9667	All Organisms → Viruses → Predicted Viral	1446

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS017304_Baylor_scaffold_3012	SRS017304_Baylor_scaffold_3012__gene_4416	F105377	MEVRSEVRDFDDLPLLTPEEAFERAWEEGGSAHPVFDRGYRIRDLSSWKAVETLLRQNDVPDITVASFGLKRFEEILDAIAMLHERGWHLWQTATNVYVGGERRTVQAIRAHYRGD
SRS017304_Baylor_scaffold_30367	SRS017304_Baylor_scaffold_30367__gene_46565	F103434	VVEVTLAVVKEGRTGRRFERGDTFTIDKVLVQPSAGNALKATENRVIRGDLTDETILKIFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS017304_Baylor_scaffold_9667	SRS017304_Baylor_scaffold_9667__gene_13722	F101360	MSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQIGTVSVSSPAPKYQVVDEGALVAWLEWNKPDAVHKVPAPWFTSAAALDGFIKQTGEIPDGVEVVKGDPRISVRISTAQADAIQELIESGDIRMIEAAGD