7000000081: Human stool microbial communities from NIH, USA - visit 1, subject 159632143

Overview

Basic Information

• IMG/M Taxon OID: 7000000081
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052557 | Ga0030512
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159632143
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 140892823
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F043945	Metagenome	155	N
F051934	Metagenome	143	N
F055775	Metagenome	138	N
F057385	Metagenome	136	N
F059982	Metagenome	133	N
F074898	Metagenome	119	N
F075480	Metagenome	119	N
F077320	Metagenome	117	N
F082715	Metagenome / Metatranscriptome	113	N
F101191	Metagenome	102	N
F101192	Metagenome	102	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2412164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	615
C2432838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	718
C2441441	Not Available	775
C2452077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	860
C2456337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	901
C2474482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1129
C2477398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1178
C2478658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1200
C2485370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1337
C2491824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1512
C2502550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1949
C2510863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2597
SRS017307_Baylor_scaffold_32734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2963

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2412164	C2412164__gene_153676	F075480	VAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGIYSPETGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGIEAAPTLRFLKVNGQTTDTPLIGAFLTQNPDGTVSLGIQVDLTEADTSHLKS
C2432838	C2432838__gene_163510	F101192	MQTEPSDKEGRNMTYRGWLLVGIALLLTALSGTQTSLCQRMRSVPVYCGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
C2441441	C2441441__gene_167689	F055775	MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIEGGTITDVILVTKEVKKKISHARVVSWLVDTTEDSPKYTIDIINANSGAVEAIALN
C2452077	C2452077__gene_173077	F102166	KKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRSNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
C2456337	C2456337__gene_175271	F043945	RYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLI
C2474482	C2474482__gene_184847	F077320	MKRKGMHRRRKLVLLAVSLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAELEMVDTLPDNTFTAELPEEIDGRLLYIRDYSASGHYQIVWEDVSAEAAEAYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEESTPTPLPEWLADW
C2477398	C2477398__gene_186372	F101191	MLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMAERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGKLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
C2478658	C2478658__gene_187027	F051934	LAQGLKALFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
C2485370	C2485370__gene_190792	F057385	AMVAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIREKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKIAEVTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPISFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDTVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTFATMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
C2491824	C2491824__gene_194601	F059982	MTMRRMTRLLCLMLLFSLITFSCPLAEETDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDADPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENVSMDGEAVYVAEDAAATASPEV
C2502550	C2502550__gene_201361	F042910	GLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITALTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
C2510863	C2510863__gene_207168	F074898	MEKCTVSFAACQDREAERTKRKQNKKAMWNAEFVIFLDKTHQMLYSERDKTVCSLSKGVFFMRKILALLLMLALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQLGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEVLGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRLAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLDNENANVFALNANVFALESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDAIGTIELTQLLDGLF
SRS017307_Baylor_scaffold_32734	SRS017307_Baylor_scaffold_32734__gene_68619	F082715	MMKFMKRSLSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYD