7000000074: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352

Overview

Basic Information

• IMG/M Taxon OID: 7000000074
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052546 | Ga0031116
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 809635352
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121878595
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F042387	Metagenome	158	N
F064818	Metagenome	128	N
F074985	Metagenome	119	N
F077403	Metagenome	117	N
F081454	Metagenome	114	N
F081456	Metagenome	114	N
F085821	Metagenome	111	N
F097525	Metagenome	104	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2768262	Not Available	573
SRS065099_LANL_scaffold_12364	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	41410
SRS065099_LANL_scaffold_12599	Not Available	1219
SRS065099_LANL_scaffold_15219	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1163
SRS065099_LANL_scaffold_18334	All Organisms → Viruses → Predicted Viral	4294
SRS065099_LANL_scaffold_33435	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1195
SRS065099_LANL_scaffold_34938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1473
SRS065099_LANL_scaffold_48856	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	829
SRS065099_LANL_scaffold_50930	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis	993
SRS065099_LANL_scaffold_73328	Not Available	564
SRS065099_LANL_scaffold_86479	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	7195
SRS065099_LANL_scaffold_97669	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	925
SRS065099_LANL_scaffold_98382	Not Available	3557

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2768262	C2768262__gene_216664	F022002	ISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS065099_LANL_scaffold_12364	SRS065099_LANL_scaffold_12364__gene_21248	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTGSK
SRS065099_LANL_scaffold_12364	SRS065099_LANL_scaffold_12364__gene_21274	F101360	VSKENALRRAAIAAHVAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTSQEEAIRELISTGDISILEIEYGDA
SRS065099_LANL_scaffold_12599	SRS065099_LANL_scaffold_12599__gene_21691	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLCSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI
SRS065099_LANL_scaffold_15219	SRS065099_LANL_scaffold_15219__gene_26385	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASF
SRS065099_LANL_scaffold_18334	SRS065099_LANL_scaffold_18334__gene_31882	F074985	VELTDGGWYNTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGRTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMNKILMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS065099_LANL_scaffold_33435	SRS065099_LANL_scaffold_33435__gene_58821	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDE
SRS065099_LANL_scaffold_34938	SRS065099_LANL_scaffold_34938__gene_61479	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK
SRS065099_LANL_scaffold_48856	SRS065099_LANL_scaffold_48856__gene_86450	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLVITAIGFLFAAFTVILYTISAE
SRS065099_LANL_scaffold_50930	SRS065099_LANL_scaffold_50930__gene_90097	F085821	MNDVFERLAALAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESTKRQILEHDKGKHDEVYIDAWVKANVNKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKIK
SRS065099_LANL_scaffold_73328	SRS065099_LANL_scaffold_73328__gene_129660	F022002	GFTLGVTTTAEARAIIQRQGGKIEDTQAGSDEEVYVIMGLKYARRSTLSVGLYFYKGHLRRIAFVFNNLDVLEQIESELVDKYGTMAEGVGTSKEKVKGIVDAFTTLEVVRRFDYEGHIGFECAYIAYTDEELERAYSAETESEI
SRS065099_LANL_scaffold_86479	SRS065099_LANL_scaffold_86479__gene_153534	F077403	MKIIMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWRRERNPIDTLRRELDVPYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLDARGAELRKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSELAYYLQGYLYYLMNPQQAHDWYQVPYLPDHAMHSVATEAVVTEGKLRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEG
SRS065099_LANL_scaffold_97669	SRS065099_LANL_scaffold_97669__gene_176279	F042387	LVSCSRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
SRS065099_LANL_scaffold_98382	SRS065099_LANL_scaffold_98382__gene_177817	F022002	MSRRLALTLGLLLALLLSLPSHAQDGQSKEPINRTISGFTLGVTTPAQARAIIQRQGGKIISAEGTQAGSDDGFYAVTGLKYARRSTLTAGLYFYKGYLRKIAFLFDKLDVLELIESELENKYGMMAEGKETSKMKSKVIFDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELNRARSAEKESEI