7000000065: Human saliva microbial communities from NIH, USA - visit 2, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 7000000065
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052537 | Ga0030210
• Sample Name: Human saliva microbial communities from NIH, USA - visit 2, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19271332
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F066860	Metagenome	126	N
F081510	Metagenome	114	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1664868	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	556
C1670936	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	659
C1681514	All Organisms → Viruses → Predicted Viral	2268
C1681640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	2657

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1664868	C1664868__gene_33882	F066860	MTTKKQKLQKQQAIDTWIVIALWVSTIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKNHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAED
C1670936	C1670936__gene_37634	F033081	MAWLFKKGMPQDPKPVFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSVVSLLTRGLETFLPAGWATGAAWTVGMTGVFLMGNFTNYTPSQRFLHKTKATRCEAYNTLLLLALWEEQAFRAGSEKWSWRERVRASMCFGLAHIVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVVL
C1681514	C1681514__gene_45657	F081510	KMKLPNMNTIKVAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPLETKSVEVDGKEIEVESIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDGDGFFLEWDTHEVWNDDKQEYEAQLYVRWKTPRNLYATTNFKDLMPKKTRKELN
C1681640	C1681640__gene_45851	F103434	VVEVTLAVIKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRDIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEP