7000000063: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763577454

Overview

Basic Information

• IMG/M Taxon OID: 7000000063
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052535 | Ga0031245
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763577454
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 108359052
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F046432	Metagenome	151	Y
F051211	Metagenome	144	N
F066860	Metagenome	126	N
F077404	Metagenome	117	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092232	Metagenome	107	N
F095633	Metagenome	105	N
F099452	Metagenome	103	N
F103436	Metagenome	101	Y
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3389430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	586
C3394786	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	611
C3407449	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	680
C3409461	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	693
C3411058	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	703
C3418291	Not Available	756
C3419891	Not Available	770
SRS015057_WUGC_scaffold_18883	Not Available	4931
SRS015057_WUGC_scaffold_24384	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5149
SRS015057_WUGC_scaffold_29464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2060
SRS015057_WUGC_scaffold_69869	All Organisms → Viruses → Predicted Viral	2261
SRS015057_WUGC_scaffold_70514	All Organisms → Viruses → Predicted Viral	1731
SRS015057_WUGC_scaffold_75129	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	840

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3389430	C3389430__gene_161105	F033081	VRKRTLTSRPTFVWSRLVTEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNIILFLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAA
C3394786	C3394786__gene_162937	F077404	GKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFIQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDS
C3407449	C3407449__gene_167434	F095633	MKNYENSTEVGRREGLTEGELRTMGALAVEATEEFRKTIVRKEAVLLGSVPFGSWDEFAKAVQEMTAYSYEPIPVKINTKRLIATAFLDDGGEMSLEEHSVPEEVFIDLSRTRCVVDADRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII
C3409461	C3409461__gene_168124	F095633	MGNYENSTEAWRREGLTEDELRTMGTLAMEATEKLKKTIIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIAKAFLDDRGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN
C3411058	C3411058__gene_168678	F046432	MTESKLSNIISKYQLPMDDYSVEVDGAFGRGEFFWVIKNQSTNQKYLLVNTYSHHGVESEIECYREGGFDNLEAIPRRIETLENASDADNEIFKYLFGLYSIFEMKS
C3418291	C3418291__gene_171221	F081455	METTNTENKNLFQQLARLGFNVNESLLELEKEYAPVEEIGMQNVDIIDAAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
C3419891	C3419891__gene_171774	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDANDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTAALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKDLMNESATMAFQY
SRS015057_WUGC_scaffold_18883	SRS015057_WUGC_scaffold_18883__gene_21865	F105378	MNVKVYVDKIKKWVQISSDEVLDINKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIITDSTHQFVTDEEKSKWNNKLNAPVPIQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIVVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE
SRS015057_WUGC_scaffold_24384	SRS015057_WUGC_scaffold_24384__gene_28126	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPTLPMACWDGKSSTTTMVPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS015057_WUGC_scaffold_29464	SRS015057_WUGC_scaffold_29464__gene_34753	F103436	MITTSKDGWCGKSDAEVLNSLRAWVLKCDLKYSKREALKKIDSAFALWGGRQYVAAVDLLDENEVYFSKEDWPYYALGIEILKARKYTYFY
SRS015057_WUGC_scaffold_69869	SRS015057_WUGC_scaffold_69869__gene_91075	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELILSSVNVFTLYKDIINLDDVSLLADLRHTEWYKDWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLKDAEHYDFEGVSEVDSYDLFDTLREDKDIELFKLAAENILINHGFFNNTDYNLYEIPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSVYFTIFDSLNEDTRTRAR
SRS015057_WUGC_scaffold_70514	SRS015057_WUGC_scaffold_70514__gene_92308	F092232	MNTQAKFIADYNDKNRPKFNDIFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEETLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDVIKLSDHDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFTKSIASYATKKTTMDQLYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDNRDPEAVAFDAQLLGQTIAKVA
SRS015057_WUGC_scaffold_75129	SRS015057_WUGC_scaffold_75129__gene_101946	F066860	MTTKKQKLQKQQAIDTWIVIALWVSTIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKNHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE