7000000057: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159571453

Overview

Basic Information

• IMG/M Taxon OID: 7000000057
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052528 | Ga0031236
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159571453
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74505445
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F051211	Metagenome	144	N
F054110	Metagenome	140	N
F078842	Metagenome	116	N
F092230	Metagenome	107	N
F095630	Metagenome	105	N
F099454	Metagenome	103	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2774750	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1141
SRS013818_Baylor_scaffold_15197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	12125
SRS013818_Baylor_scaffold_21443	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2523
SRS013818_Baylor_scaffold_45643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1984
SRS013818_Baylor_scaffold_55048	All Organisms → cellular organisms → Bacteria	541
SRS013818_Baylor_scaffold_58647	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	996
SRS013818_Baylor_scaffold_61766	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1422
SRS013818_Baylor_scaffold_63665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2140
SRS013818_Baylor_scaffold_65132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3584

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2774750	C2774750__gene_134271	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDICFMDAELYGPEAKKAYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYVKYSKESDDLFCECVLEYSIDESHIQTPVDQVLAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYTKSLSSSVFCNNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMANSIELDIYEVNS
SRS013818_Baylor_scaffold_15197	SRS013818_Baylor_scaffold_15197__gene_16562	F103433	MKEWSKNKPGVVFFFVIWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS013818_Baylor_scaffold_21443	SRS013818_Baylor_scaffold_21443__gene_23861	F095630	MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFILSDIILTAKTYGDTCFMDVEFYSSEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGIIKKDDSIVHQLKCEFMEYVQFLSRSPFCNNLQAALVRCSHNYEQVLLDRGTLNSILGGCVIGGKGWLNMADNTLIGQILKAIKIDVYGI
SRS013818_Baylor_scaffold_45643	SRS013818_Baylor_scaffold_45643__gene_55704	F092230	MVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVRNTEEKEAHDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILNAIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
SRS013818_Baylor_scaffold_55048	SRS013818_Baylor_scaffold_55048__gene_69153	F026592	PQGIAALASQGSVAPLTEQSDATFSVGQFSSANRE
SRS013818_Baylor_scaffold_58647	SRS013818_Baylor_scaffold_58647__gene_75173	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLMFPHKYKNGKTFKQGQLYKKESEYSSTKQHEVLLF
SRS013818_Baylor_scaffold_61766	SRS013818_Baylor_scaffold_61766__gene_80359	F099454	TLMKASKLLWAVIVALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKSLASPSMKVIQQAK
SRS013818_Baylor_scaffold_63665	SRS013818_Baylor_scaffold_63665__gene_84095	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKICRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS013818_Baylor_scaffold_65132	SRS013818_Baylor_scaffold_65132__gene_87909	F103436	MITTSKDGWCGKSDAEILNSLRDWVLRCDLKYSKREALKKIDSAFALWGNAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY