7000000056: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 604812005

Overview

Basic Information

• IMG/M Taxon OID: 7000000056
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052527 | Ga0028026
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 604812005
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6376998
• Sequencing Scaffolds: 3
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C892954	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9639
SRS046623_LANL_scaffold_3765	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1506
SRS046623_LANL_scaffold_3802	All Organisms → Viruses → Predicted Viral	3516

Sequences

Scaffold ID	Protein ID	Family	Sequence
C892954	C892954__gene_14130	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDFYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL
C892954	C892954__gene_14134	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLIMTAIGFLLCAMTVILYTISAE
SRS046623_LANL_scaffold_3765	SRS046623_LANL_scaffold_3765__gene_2968	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACE
SRS046623_LANL_scaffold_3765	SRS046623_LANL_scaffold_3765__gene_2969	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDETVKAVNEARDHIEIED
SRS046623_LANL_scaffold_3765	SRS046623_LANL_scaffold_3765__gene_2970	F018385	MMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDSKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVKCLT
SRS046623_LANL_scaffold_3802	SRS046623_LANL_scaffold_3802__gene_3189	F074985	MMELTDGGWYKTPRIIKGEDFLAHIHDTYVSGNATYVEFKASEGEIRILEYRKLYDVDTENAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDSKFWHVMGLKLDVDADGSSFWGLYLKRQDSDFMKEIRMSLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYNRPAIKLRIQTDPETGEQKYLLDHIKAMHID
SRS046623_LANL_scaffold_3802	SRS046623_LANL_scaffold_3802__gene_3190	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESQQYHVKSFMRVPGSTDLWITAEIDTGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLEHVEWAADTIRYF
SRS046623_LANL_scaffold_3802	SRS046623_LANL_scaffold_3802__gene_3191	F027205	VASRLVVSADDILKAVKESEAFERKALTEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRVKRNTK