7000000054: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764285508

Overview

Basic Information

• IMG/M Taxon OID: 7000000054
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052525 | Ga0027939
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 764285508
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26420731
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081456	Metagenome	114	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1144489	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	960
SRS015540_WUGC_scaffold_16077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44910
SRS015540_WUGC_scaffold_3017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26025

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1144489	C1144489__gene_50787	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAE
SRS015540_WUGC_scaffold_16077	SRS015540_WUGC_scaffold_16077__gene_13778	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGDALKAVENRVIRGGLTDETTLRVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS015540_WUGC_scaffold_3017	SRS015540_WUGC_scaffold_3017__gene_1380	F103434	MVGFRPRRGRYLENGPHVVEVTLAIVKEGRTGRRYERGETFTVDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRVWPGGPHSWVKVIKGPDSLVGKMFQQAGEALTYDASPMTKHFSVRCDTLGTTAR