7000000046: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683

Overview

Basic Information

• IMG/M Taxon OID: 7000000046
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052511 | Ga0031007
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159591683
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 134092842
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
unclassified Campylobacter → Campylobacter sp.	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F046431	Metagenome	151	Y
F051211	Metagenome	144	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F074985	Metagenome	119	N
F078842	Metagenome	116	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F095630	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3559707	Not Available	565
C3563439	Not Available	576
C3584752	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	655
C3618447	All Organisms → cellular organisms → Bacteria	861
C3620255	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	878
C3624863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	919
C3635830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1048
C3655748	Not Available	1466
C3678108	All Organisms → cellular organisms → Bacteria	3712
SRS013252_Baylor_scaffold_13730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4237
SRS013252_Baylor_scaffold_25858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	4823
SRS013252_Baylor_scaffold_42115	All Organisms → cellular organisms → Bacteria	781
SRS013252_Baylor_scaffold_48066	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	627
SRS013252_Baylor_scaffold_50700	unclassified Campylobacter → Campylobacter sp.	4405
SRS013252_Baylor_scaffold_51062	All Organisms → Viruses → Predicted Viral	1514
SRS013252_Baylor_scaffold_63115	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4569
SRS013252_Baylor_scaffold_63796	All Organisms → cellular organisms → Bacteria	7438
SRS013252_Baylor_scaffold_9696	Not Available	30972

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3559707	C3559707__gene_175547	F022002	EARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESEI
C3563439	C3563439__gene_177000	F022002	YAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI
C3584752	C3584752__gene_185529	F059076	GQKVGINTTIPTRTLTIKNSTANNGKPLLRLVDAPIYSKNVGSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYKGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPNSGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFN
C3618447	C3618447__gene_199185	F046431	MKKISKLCITIILILSIIITYGSGIIARAAESDLTLTPRPETNNIHLKWTGPQNSSYKVYQKKPGSNHFETIGLTDFSNNATDEEVKVLNIYPISEYNNPAVSTGTTIPNVNVTYLDGYTETIPKSALLKVWMEGRNSN
C3620255	C3620255__gene_199962	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTEIMISEEDLDIERSDLEDLIRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDEIYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C3624863	C3624863__gene_201849	F061925	MGWEYSINLDSEESVSSVVKDLKNCELFSSSTTDYIDWKKPKSIDSIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHNHYLTDCDTDEEVTLEHIFRSVI
C3635830	C3635830__gene_206565	F046431	EYINVNIRYSIFKFKKEISMLKKVTQKGVKIISIIIMVLSMMISYSSIMISNAAESDLTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASSFETIGLTDFSNVDEEVKVLNVYPVPTAVYNTPNVQVTYLDGTSEVIPKTALLKVWMEGRNSKRRWKYN
C3655748	C3655748__gene_215694	F070224	MKRLLFLLLTLLHYTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH
C3678108	C3678108__gene_229127	F078842	MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNELFVLSDIILSAKTYGDTCFMDAESYSPEAKKTYDEAVREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKARNESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLGCDFLEYIKNLSSSVFCDNLQKALVRCSDSHKQVILNRSTLNAILGGCVIGGKGWLEMADSARIRQMVNSIELDIYEVDS
SRS013252_Baylor_scaffold_13730	SRS013252_Baylor_scaffold_13730__gene_19812	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQAFDKHTIPEKAVRRVVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQGEMTYRKSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIVMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFAAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS013252_Baylor_scaffold_25858	SRS013252_Baylor_scaffold_25858__gene_36688	F097526	MTENSTMATTIYTQDDYCRLCERLNDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAAEFEQAGRNGHPDPAELERRERWDSHCKRLQQHARMAGDQITNADNAAVSRLTKQCEKNGSRDTAIPSPHDDGYGFTAGLRDFPLNASQTALLWRMAVLTIAEMTDTTPELTAHYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLLSAAKAYENRNTDNRLEDAMTK
SRS013252_Baylor_scaffold_42115	SRS013252_Baylor_scaffold_42115__gene_59130	F051211	LLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRIFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRSKLFRGNPKEFYIAIDKWLADTRAHHSS
SRS013252_Baylor_scaffold_48066	SRS013252_Baylor_scaffold_48066__gene_67574	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASEFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQTLTLKIVVIALATALLFEYAYP
SRS013252_Baylor_scaffold_50700	SRS013252_Baylor_scaffold_50700__gene_71270	F085821	MNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHNLLNLWYESTRRQILEQDNGKHDEAYIDEWVKANVNKTLSTIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKK
SRS013252_Baylor_scaffold_51062	SRS013252_Baylor_scaffold_51062__gene_71803	F074985	MTRSVISEEDIVELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSDFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS013252_Baylor_scaffold_63115	SRS013252_Baylor_scaffold_63115__gene_94976	F030786	MKRTRIHKVVFQMLVVMVVTGSLQMLLKNGSATKGGNTMGTKKISLADITDGDDSKEGAIKVKYFDDDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS013252_Baylor_scaffold_63796	SRS013252_Baylor_scaffold_63796__gene_96950	F101358	MTEKYSASHGAENQAPPPLPPQPEHLLTQPITTDGMPQERATHPDTYIIPKHENVPQYLWNVLRSSGQLDEGWIDREIINKDDVTLVRMTKLVNRSNIYQLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYDHLGGDSARQLVGSVAAKASGEVDNSPLVQRALECIR
SRS013252_Baylor_scaffold_9696	SRS013252_Baylor_scaffold_9696__gene_13997	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNTNHEAFTLDYPVVGYWRGEAEETAVLYLSDDRQRVMNTLSELKEVLDQEAIAYQIENDLQLI
SRS013252_Baylor_scaffold_9696	SRS013252_Baylor_scaffold_9696__gene_14008	F084362	MSLMNCTFTVRWSDEKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKQSETEAEQKGFWWEK