7000000045: Human stool microbial communities from NIH, USA - visit 1, subject 159268001

Overview

Basic Information

• IMG/M Taxon OID: 7000000045
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052510 | Ga0030473
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159268001
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 159062704
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062845	Metagenome	130	N
F068811	Metagenome	124	N
F078004	Metagenome	117	N
F097172	Metagenome / Metatranscriptome	104	Y
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2565476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	780
SRS013687_Baylor_scaffold_10234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1152
SRS013687_Baylor_scaffold_52245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3217
SRS013687_Baylor_scaffold_52754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1353

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2528584	C2528584__gene_191964	F078004	ITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLAAQTVLIIGTIFHNAF
C2565476	C2565476__gene_205325	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKSVTSVYKYHLEGCDKKGYVMDGFSKSSFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKDNPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTIGKYDTLYENNYLARLRTILDNYKTEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYV
C2615948	C2615948__gene_224293	F078004	ITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
SRS013687_Baylor_scaffold_10234	SRS013687_Baylor_scaffold_10234__gene_14816	F099269	MRRPPFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGVLISDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
SRS013687_Baylor_scaffold_52245	SRS013687_Baylor_scaffold_52245__gene_100143	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSDTAPSKSCA
SRS013687_Baylor_scaffold_52754	SRS013687_Baylor_scaffold_52754__gene_101402	F068811	MDQDGSEHNICSTREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRIK