Sample 7000000044

Basic Information
IMG/M Taxon OID	7000000044 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052509 \| Ga0031006
Sample Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159369152
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000044 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052509 | Ga0031006

Sample Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159369152

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	165426751
Sequencing Scaffolds	17
Novel Protein Genes	23
Associated Families	17

Dataset Contents

Total Genome Size

165426751

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F041827	Metagenome	159	Y
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F058221	Metagenome	135	N
F061926	Metagenome	131	N
F066860	Metagenome	126	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N
F092231	Metagenome	107	Y
F095632	Metagenome	105	N
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103430	Metagenome	101	N
F103434	Metagenome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C4321787	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1045	Open in IMG/M
C4335234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1271	Open in IMG/M
SRS013170_Baylor_scaffold_1120	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3229	Open in IMG/M
SRS013170_Baylor_scaffold_123308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	9592	Open in IMG/M
SRS013170_Baylor_scaffold_123969	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	561	Open in IMG/M
SRS013170_Baylor_scaffold_137460	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	30746	Open in IMG/M
SRS013170_Baylor_scaffold_140387	All Organisms → cellular organisms → Bacteria	43179	Open in IMG/M
SRS013170_Baylor_scaffold_32360	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44009	Open in IMG/M
SRS013170_Baylor_scaffold_35120	Not Available	2068	Open in IMG/M
SRS013170_Baylor_scaffold_40476	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1682	Open in IMG/M
SRS013170_Baylor_scaffold_52876	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1675	Open in IMG/M
SRS013170_Baylor_scaffold_57927	All Organisms → cellular organisms → Bacteria	16762	Open in IMG/M
SRS013170_Baylor_scaffold_60826	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	868	Open in IMG/M
SRS013170_Baylor_scaffold_65158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	2203	Open in IMG/M
SRS013170_Baylor_scaffold_66896	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	740	Open in IMG/M
SRS013170_Baylor_scaffold_68730	Not Available	31392	Open in IMG/M
SRS013170_Baylor_scaffold_7085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	931	Open in IMG/M

Sequences

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000044: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159369152

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4321787	C4321787__gene_295509	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYKLPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK
C4335234	C4335234__gene_300104	F066860	MTTKKQKLQKQQTIDRWIVIALWASAIWFSLARGFITGVGGWVLALLGPWALIVSCICVAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
SRS013170_Baylor_scaffold_1120	SRS013170_Baylor_scaffold_1120__gene_1278	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE
SRS013170_Baylor_scaffold_123308	SRS013170_Baylor_scaffold_123308__gene_155869	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHATHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASVRLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
SRS013170_Baylor_scaffold_123969	SRS013170_Baylor_scaffold_123969__gene_156919	F101359	IFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS013170_Baylor_scaffold_137460	SRS013170_Baylor_scaffold_137460__gene_181249	F077403	MNTIMPLLRRLVLIILLLPSMCTVYAEERISVHFEVRWHREQNPMDTLGRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASAPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS013170_Baylor_scaffold_140387	SRS013170_Baylor_scaffold_140387__gene_188710	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWLRPSLYDIERKEN
SRS013170_Baylor_scaffold_140387	SRS013170_Baylor_scaffold_140387__gene_188731	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN
SRS013170_Baylor_scaffold_32360	SRS013170_Baylor_scaffold_32360__gene_35000	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPRIDGLQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAVAALDGFIKQTGEVPDGVEVVQGDPRISVRISTPQEEAIRDLISTGDISLLEIEGGDA
SRS013170_Baylor_scaffold_32360	SRS013170_Baylor_scaffold_32360__gene_35026	F103434	VVEVTLAAVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDALGTESR
SRS013170_Baylor_scaffold_35120	SRS013170_Baylor_scaffold_35120__gene_38067	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKHGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELERAYSAENENEI
SRS013170_Baylor_scaffold_35120	SRS013170_Baylor_scaffold_35120__gene_38068	F022002	MTNIYSPSSRSMSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS013170_Baylor_scaffold_40476	SRS013170_Baylor_scaffold_40476__gene_44159	F058221	MGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS013170_Baylor_scaffold_52876	SRS013170_Baylor_scaffold_52876__gene_59870	F051212	LVRFTTNHHKGIWKEKYLRINYFMKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLNNHLNLEK
SRS013170_Baylor_scaffold_57927	SRS013170_Baylor_scaffold_57927__gene_66378	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGESIYLLASPLKSGHTPGSKIRTRDWVKVDYSDRNNIIVRKVGGSLIIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYMDYNHPEACIIH
SRS013170_Baylor_scaffold_57927	SRS013170_Baylor_scaffold_57927__gene_66379	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKADYSNQNNLIIFGFGDSLVLENRFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH
SRS013170_Baylor_scaffold_60826	SRS013170_Baylor_scaffold_60826__gene_70028	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIVYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRRTISRLYYEEVK
SRS013170_Baylor_scaffold_65158	SRS013170_Baylor_scaffold_65158__gene_75600	F092231	MIIFAPQEFITWSNTLIQFPWPIQVDDFASYAERLGWTPTPRPTWFNVNANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAVELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGDMFAQVISGRWSVLFDFFTPEGRRQFL
SRS013170_Baylor_scaffold_66896	SRS013170_Baylor_scaffold_66896__gene_77881	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLYHQETHQKTEKIAECSDKACYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS013170_Baylor_scaffold_68730	SRS013170_Baylor_scaffold_68730__gene_80272	F103430	MIEQITIKAFIGSDNKTKKLEVDKIISIVNANHEAFTLDYPVVGYWRGEAEETAVLYLSDERQKVMNTLSELKEVLHQEAIAYQIENDLQLI
SRS013170_Baylor_scaffold_68730	SRS013170_Baylor_scaffold_68730__gene_80283	F084362	MSLMNCAFTVRWSDDKNKPHSKTYETEVSAKKAKKWLLDHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK
SRS013170_Baylor_scaffold_7085	SRS013170_Baylor_scaffold_7085__gene_6312	F092231	MIIFAPQESITWANALMHFPWPIQLNNFPPYAERLGWKPTSLPDEFSLCPDNDDEITILSSDREGNVRNLFLRAAANEAKNTTGAVELNDHFVSCVAAGREAWGEPFLLEAGDGPSVMWRFPGDMF
SRS013170_Baylor_scaffold_7085	SRS013170_Baylor_scaffold_7085__gene_6313	F092231	IFAPQEFIMWTNTLIQFPWPIQVDDFSPYAERLGWKPGPRPTRFSVHDDEHVTLGDDEAGSICELFLHMAINDADDVEGAAELNDHLVSCVAAGRKVWGESFLLEAGDDPTATWRFPGDMFAQVTGGFAAVLFRFFTPEGRWYFL