7000000038: Human stool microbial communities from NIH, USA - visit 1, subject 160400887

Overview

Basic Information

• IMG/M Taxon OID: 7000000038
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052503 | Ga0030540
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160400887
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 220664319
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F078004	Metagenome	117	N
F087336	Metagenome	110	N
F088920	Metagenome	109	Y
F089054	Metagenome	109	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4063479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	575
C4197096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1220
C4215606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1476
C4239432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2050
C4264404	All Organisms → cellular organisms → Bacteria	3811

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4063479	C4063479__gene_165720	F090514	WSSRMNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIF
C4066007	C4066007__gene_167318	F078004	YRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
C4108922	C4108922__gene_195422	F078004	IHMIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
C4197096	C4197096__gene_262895	F013656	LKNNIKKIYKEPLKSEMETTVNVMYGENKLSIYTNKVDLQKQLNKLIGEPIKEYKIKRSISGSLWEMSLNDKTKIQKVIVKANIYEL
C4215606	C4215606__gene_280432	F088920	VSANLHHYPAFGIGVILHLILHFSPKAAIFAPKRAISLIFVPTLFFAGLSVLFPHTSPKISGQTSLYQPWLSPYCLFKD
C4239432	C4239432__gene_306779	F087336	MHCLLRGMVAELEQVSKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP
C4264404	C4264404__gene_344756	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINQWHKHSTYIRLKLREILEVNLTDITLIDIISLP