Sample 7000000032

Basic Information
IMG/M Taxon OID	7000000032 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052496 \| Ga0030559
Sample Name	Human stool microbial communities from NIH, USA - visit 2 of subject 159207311
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000032 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0052496 | Ga0030559

Sample Name

Human stool microbial communities from NIH, USA - visit 2 of subject 159207311

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	214500122
Sequencing Scaffolds	19
Novel Protein Genes	21
Associated Families	21

Dataset Contents

Total Genome Size

214500122

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
Not Available	1
All Organisms → Viruses → Predicted Viral	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

Not Available

All Organisms → Viruses → Predicted Viral

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F044555	Metagenome / Metatranscriptome	154	N
F051935	Metagenome	143	N
F056623	Metagenome	137	N
F057385	Metagenome	136	N
F068856	Metagenome	124	N
F070133	Metagenome	123	N
F073573	Metagenome	120	N
F074964	Metagenome	119	N
F082715	Metagenome / Metatranscriptome	113	N
F087213	Metagenome	110	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F089054	Metagenome	109	N
F090484	Metagenome	108	N
F099406	Metagenome	103	N
F101191	Metagenome	102	N
F101355	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C3730929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	548	Open in IMG/M
C3760893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	625	Open in IMG/M
C3788886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	729	Open in IMG/M
C3805658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	812	Open in IMG/M
C3812774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	855	Open in IMG/M
C3813192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	857	Open in IMG/M
C3815684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	872	Open in IMG/M
C3840315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1075	Open in IMG/M
C3851486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1210	Open in IMG/M
C3863324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1395	Open in IMG/M
C3874628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1645	Open in IMG/M
C3906687	All Organisms → cellular organisms → Bacteria	3472	Open in IMG/M
SRS024132_Baylor_scaffold_13822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1746	Open in IMG/M
SRS024132_Baylor_scaffold_15845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	4223	Open in IMG/M
SRS024132_Baylor_scaffold_2126	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	132851	Open in IMG/M
SRS024132_Baylor_scaffold_36440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1616	Open in IMG/M
SRS024132_Baylor_scaffold_37256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2572	Open in IMG/M
SRS024132_Baylor_scaffold_8303	Not Available	961	Open in IMG/M
SRS024132_Baylor_scaffold_8930	All Organisms → Viruses → Predicted Viral	1062	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3730929	C3730929__gene_219938	F087213	AESIDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
C3760893	C3760893__gene_235238	F042910	AWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTIAPGAAVRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRY
C3788886	C3788886__gene_249655	F056623	RQLLHLLYVREAAALQSMTLVRAEIPAAQKRDWKLLILPLAAAVLNLGTLALWLTLPNCVTPENSGWMGRFALCIVAQSVSLCAAIGSIVSAMRRKPPKPVVVADEIEFRRRLVEAEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLNAVGCEAVDYAPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG
C3805658	C3805658__gene_258493	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFCKKLLPYVLFFFFKI
C3812774	C3812774__gene_262217	F088921	YKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSTMIRDKMRNK
C3813192	C3813192__gene_262432	F088914	VCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVSYTPKENIKNPGEFIVFSAWYAAKALEMDVK
C3815684	C3815684__gene_263687	F051935	GGISCAVAENTNPIVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAANLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAIGYGNSDSADVYFYFSDENQQSWELVMELGDANVSYFSLIYNAEGYGITEIIMSYDCGMKFQVDAPGYLQLSYEVDPVEEYSCRVEDFDLSTCPLSMQELLVPAVVSCGEAGAELYIALQQNIQPIFVLADGEAIEAIPQRWQRDWVIVCYRGNYLFMKTENCKMEE
C3840315	C3840315__gene_277070	F101191	MLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLVIELRNPLCVSGASLTSVPDGAGRLPFTFLAQSDRPGDVNLPARLYWWKEETHDAA
C3851486	C3851486__gene_283344	F070133	MVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
C3863324	C3863324__gene_290061	F057385	LAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEASANLGSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKIAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
C3874628	C3874628__gene_296605	F043413	PPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECEGRAYTLEIEGCGGGDFMSGMFLPDETDSWSDSPFGFDGVLWDDDMQSPPESVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEICQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
C3906687	C3906687__gene_317341	F082715	MMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQTRWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNDVVSTVNLDARDATILLVEPDEEGNG
SRS024132_Baylor_scaffold_13822	SRS024132_Baylor_scaffold_13822__gene_26568	F073573	MAAIRNKNKKHLPQGGFTMPTIVSFYQRFPNEAPPLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMPFQVRRMELRTGDTTYAILPDNVQQYTKRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTA
SRS024132_Baylor_scaffold_15845	SRS024132_Baylor_scaffold_15845__gene_30560	F087335	MIELYFNDANLLPENREEEQYAKVTLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEKMYQRVSNYD
SRS024132_Baylor_scaffold_2126	SRS024132_Baylor_scaffold_2126__gene_4074	F074964	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENGEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
SRS024132_Baylor_scaffold_2126	SRS024132_Baylor_scaffold_2126__gene_4192	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASKETKSVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPRTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFSDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATDLSMAVSAEDAGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
SRS024132_Baylor_scaffold_2126	SRS024132_Baylor_scaffold_2126__gene_4211	F090484	MDLPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDPLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSVAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKTGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIKSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
SRS024132_Baylor_scaffold_36440	SRS024132_Baylor_scaffold_36440__gene_84102	F068856	LVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPMEKE
SRS024132_Baylor_scaffold_37256	SRS024132_Baylor_scaffold_37256__gene_88223	F043945	VTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE
SRS024132_Baylor_scaffold_8303	SRS024132_Baylor_scaffold_8303__gene_15893	F044555	MKTTNPSSRITISQNGNRILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILKNPGDLVSLSPYRR
SRS024132_Baylor_scaffold_8930	SRS024132_Baylor_scaffold_8930__gene_17037	F089054	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELRPYLRYPNQRINNNHLHSEHIRLQIRDILQIPLTDITIIDIISLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000032: Human stool microbial communities from NIH, USA - visit 2 of subject 159207311

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences