7000000026: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158742018

Overview

Basic Information

• IMG/M Taxon OID: 7000000026
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052490 | Ga0031004
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158742018
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 119405106
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F061926	Metagenome	131	N
F080165	Metagenome	115	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F092231	Metagenome	107	Y
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2396794	Not Available	530
SRS011255_Baylor_scaffold_13289	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	506
SRS011255_Baylor_scaffold_14306	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	999
SRS011255_Baylor_scaffold_3219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1766
SRS011255_Baylor_scaffold_34251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1640
SRS011255_Baylor_scaffold_38446	All Organisms → cellular organisms → Bacteria → Proteobacteria	1691
SRS011255_Baylor_scaffold_53932	All Organisms → cellular organisms → Bacteria	43154
SRS011255_Baylor_scaffold_61522	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	511
SRS011255_Baylor_scaffold_65077	Not Available	610
SRS011255_Baylor_scaffold_71747	All Organisms → cellular organisms → Bacteria	3560

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2396794	C2396794__gene_165193	F089056	SKIKEADNTKTLEKNYAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDISFIAITFTNKNEILFRKGIQ
SRS011255_Baylor_scaffold_13289	SRS011255_Baylor_scaffold_13289__gene_13540	F080165	KKDKIMKNKKFLLAILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLKYTFTRYILR
SRS011255_Baylor_scaffold_14306	SRS011255_Baylor_scaffold_14306__gene_14688	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSKLYNHLNLEK
SRS011255_Baylor_scaffold_3219	SRS011255_Baylor_scaffold_3219__gene_2544	F097526	MATTIYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAGEMEKAGRNGHPTPEEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTAQCERNGRSDTELPVARNDAYGFAAALRDIPLTAPQINLLWRMAVLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLAWLLHEQ
SRS011255_Baylor_scaffold_34251	SRS011255_Baylor_scaffold_34251__gene_39312	F092231	FAPQEFITWANALMQFPWPIQLNNFPPYAERLGWKPTSLPDEFSVCPDNDDEITILSSDRDGNVRNLFLPMASDEAEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFAQVISGRWSVLFDFFTPEGRRQFL
SRS011255_Baylor_scaffold_38446	SRS011255_Baylor_scaffold_38446__gene_44788	F097526	KAGRNGHPDPAEQARRVQWDCQFTVLQQHARMAHCEIVNADNAAVSRLTRQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAATSGLAGTEAMQAAVPVSRQQDGRQSP
SRS011255_Baylor_scaffold_53932	SRS011255_Baylor_scaffold_53932__gene_67355	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETFAETIDSMKTPQTN
SRS011255_Baylor_scaffold_53932	SRS011255_Baylor_scaffold_53932__gene_67375	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKTS
SRS011255_Baylor_scaffold_61522	SRS011255_Baylor_scaffold_61522__gene_79721	F061926	DYICVRYQIMMIKTAKHIKTFLASMLLIIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS
SRS011255_Baylor_scaffold_65077	SRS011255_Baylor_scaffold_65077__gene_86012	F085821	IFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHYLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSVIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHI
SRS011255_Baylor_scaffold_71747	SRS011255_Baylor_scaffold_71747__gene_99648	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPKERTTHPDTHSIPKRDDVPQYLWNVLRSSGQLDEGWVDVEIITEDGVTLIRMAKPVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMIKDGRLQPVADTTHATRQNDSTDEQETEVLPAQGGDTHEYRSGDSARQLVGSVAAKASDTEVDNSPLVERVLGRVE