7000000010: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172

Overview

Basic Information

• IMG/M Taxon OID: 7000000010
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052474 | Ga0031052
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765135172
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21014360
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1264902	All Organisms → Viruses	574
SRS018778_WUGC_scaffold_12106	All Organisms → Viruses	871
SRS018778_WUGC_scaffold_6945	All Organisms → Viruses	2588

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1264902	C1264902__gene_27233	F105377	VRNFDKLPLLTPEEAFDRAREEGGSAHPVFDRGYRVRGLDSWKTIETLLCQYDVQDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI
SRS018778_WUGC_scaffold_12106	SRS018778_WUGC_scaffold_12106__gene_11800	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRLLFDHGYRVRGLNDWKGIETLLRQYDVDDAVIASFGLKRFEEIFDVFAMLSDRGWSLWQTSANVYVDGELRTVPAIRAHYCGD
SRS018778_WUGC_scaffold_6945	SRS018778_WUGC_scaffold_6945__gene_5617	F105377	VRDFDSLPLLTPEEAFERAREMGWDLPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDAFAMLHERGWRLWQTTAKVYVGGELRTVQAIRARYRDV