7000000006: Human stool microbial communities from NIH, USA - visit 1, subject 737052003

Overview

Basic Information

• IMG/M Taxon OID: 7000000006
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052470 | Ga0029056
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 737052003
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89716939
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus → Anaerotruncus colihominis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F074899	Metagenome / Metatranscriptome	119	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1503593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Anaerotruncus → Anaerotruncus colihominis	983
C1539943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	7265
SRS054956_LANL_scaffold_12723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	19265
SRS054956_LANL_scaffold_13711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4912
SRS054956_LANL_scaffold_28957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	16697

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1503593	C1503593__gene_138916	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVTS
C1539943	C1539943__gene_145458	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEGTIRNFEKVEQEGALTPPYLGKVYFRSRLRGK
SRS054956_LANL_scaffold_12723	SRS054956_LANL_scaffold_12723__gene_26392	F044554	VLAGQFIPVLCASIARLFPCRTEIARCLTLDFSISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
SRS054956_LANL_scaffold_13711	SRS054956_LANL_scaffold_13711__gene_28500	F092227	GEMNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
SRS054956_LANL_scaffold_28957	SRS054956_LANL_scaffold_28957__gene_61022	F047126	VYLKTKKMTNISQTQAGFKLKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC