7000000004: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817

Overview

Basic Information

• IMG/M Taxon OID: 7000000004
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052468 | Ga0029052
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24444730
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F103431	Metagenome	101	N
F103436	Metagenome	101	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1597965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	604
C1610290	All Organisms → Viruses → Predicted Viral	1150
C1611908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1503
C1613380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4428
SRS054776_LANL_scaffold_14507	All Organisms → Viruses	576
SRS054776_LANL_scaffold_16241	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7104
SRS054776_LANL_scaffold_20534	All Organisms → Viruses → Predicted Viral	3342
SRS054776_LANL_scaffold_20654	All Organisms → Viruses → Predicted Viral	2754
SRS054776_LANL_scaffold_8369	All Organisms → Viruses → Predicted Viral	2772

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1597965	C1597965__gene_47078	F018385	MAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVNKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
C1610290	C1610290__gene_54018	F051214	MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPLYVYNNREYQIACEFLRQVMHDKIDLKDEWI
C1610290	C1610290__gene_54019	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
C1611908	C1611908__gene_55104	F103431	MIDLDALIVGMLFFIQLFLQGIAWCVAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDNDKDAESQKEGFHVCIPEG
C1613380	C1613380__gene_56348	F103436	MITTSKGGWRYKSDDEIFDSLRDWVMKCDLKYSKDDALGKIARASALWGGADYVTAVHLLDENKPYFKKSDWPYYALGIEILRARKHEFFNE
SRS054776_LANL_scaffold_14507	SRS054776_LANL_scaffold_14507__gene_9104	F105377	VRDFDSLPLLTPEEAFERAREMGWNRPLFDHGYRVRGLEAWKAIETLLRQYDVEDLVIASFGLKGIEEIFDACAMLHERSWRLWQTTAKVYVGGELRTVQAIRARYRDV
SRS054776_LANL_scaffold_16241	SRS054776_LANL_scaffold_16241__gene_10893	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL
SRS054776_LANL_scaffold_16241	SRS054776_LANL_scaffold_16241__gene_10897	F081456	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAMTVILYTISAE
SRS054776_LANL_scaffold_20534	SRS054776_LANL_scaffold_20534__gene_16726	F027205	VASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKDPRETLHPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRK
SRS054776_LANL_scaffold_20654	SRS054776_LANL_scaffold_20654__gene_16986	F051214	MGYRLLKGTHMPGKIIAHHTHLRIDTEFIELRDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLV
SRS054776_LANL_scaffold_8369	SRS054776_LANL_scaffold_8369__gene_3977	F071329	MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEARSHVEIED