3300034685: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-5

Overview

Basic Information

• IMG/M Taxon OID: 3300034685
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324339 | Ga0310149
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-5
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 245194943
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Alt. (m): N/A
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077200	Metagenome / Metatranscriptome	117	N
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310149_000949	Not Available	25788
Ga0310149_008497	All Organisms → cellular organisms → Bacteria	4447

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310149_000949	Ga0310149_000949_17132_17464	F101010	MILFNNIYATVWSVEDKGNYVKGRISTSEKNKEGEYVNSNWFVTFVGKAKEPALALSTRDRIKIISGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNESNDNFDDLPF
Ga0310149_008497	Ga0310149_008497_157_918	F077200	MMNKFTVIDVKTQPNIERIKEYAQRYGMTLEEAIERKRIGGDYFPIRDQEIVSVGILNFVHNNEDKASIMATVFTGEEKKVLDATAEKLEKIVKATGKPFFITGDGRKYALELLAGRAMAYMIEAKKEDQEISPELQNMIRIITNPKHGYLKPFDTRDSIDMQAVFGLGNGVIPLPKELQYKNEDLPRLAEETKRILLDMTKNYACYIEAQGEKMKPVIYKLDEKIFKTAEIFEFEETKAKNEEEMEEKIDGR