3300034684: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-4

Overview

Basic Information

• IMG/M Taxon OID: 3300034684
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324338 | Ga0310148
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-4
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 0
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Alt. (m): N/A
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F087072	Metagenome / Metatranscriptome	110	Y
F088079	Metagenome / Metatranscriptome	109	N
F104682	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310148_000658	Not Available	42252
Ga0310148_005388	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7576
Ga0310148_010246	All Organisms → Viruses → Predicted Viral	4056
Ga0310148_061918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	781
Ga0310148_068364	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	715
Ga0310148_086236	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	584
Ga0310148_098705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310148_000658	Ga0310148_000658_1428_1781	F022008	MTLSDIEILQSTLRDLSKQVQKLSEENRVSFNHIHDRLTRIETQMSERECQFKRYEKQLENHEVRIRTVESELGTLRDVPERLWRVSMSNSRLTGMVAAAGGVGGLVATIIVKMLGD
Ga0310148_005388	Ga0310148_005388_3_248	F088079	MLTEKAIWLEKVPFRSIDGAIGGQNCSVYFVESMIVGQSCIFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNV
Ga0310148_010246	Ga0310148_010246_854_1228	F104682	MREIGIDRPRFDIKVSTQTFTLYFIPNIARKKYIDFWARVEEMMKAMKIQNKKKRKEMVDAISSDDEDELLREIIQIIMEANGYVYDAEWWEGHTDAEMQLEFVRAVIENADDSKKKVMAMLKA
Ga0310148_061918	Ga0310148_061918_523_780	F088079	MLTEKAIWLENVPFRNIDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLGIFIHICEIYKVDITFFKSNVVSTK
Ga0310148_068364	Ga0310148_068364_479_715	F088079	MLTEKAIWLEKVPFRSIDEAIGGQNCSVYFVESMIVEQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFK
Ga0310148_086236	Ga0310148_086236_361_582	F088079	MLTKKAIWLENVPFRNVDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLGIFVHICEIYKVD
Ga0310148_098705	Ga0310148_098705_1_189	F087072	FSLELSEEELSIIAGALYCANNEDIICFVDKYKYPCAGYSFDEVAELQEKLSEEINKLIENR