3300034657: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 513_2600

Overview

Basic Information

• IMG/M Taxon OID: 3300034657
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133511 | Gp0348970 | Ga0326750
• Sample Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 513_2600
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29241938
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → environmental samples → uncultured virus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extreme Environments Viral Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.355
  • Long. (^o): -44.909
  • Alt. (m): N/A
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000161	Metagenome / Metatranscriptome	1845	Y
F004794	Metagenome / Metatranscriptome	423	Y
F005148	Metagenome / Metatranscriptome	410	Y
F052875	Metagenome	142	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0326750_11037	Not Available	576
Ga0326750_11761	Not Available	549
Ga0326750_12619	All Organisms → Viruses → environmental samples → uncultured virus	521
Ga0326750_12676	Not Available	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0326750_11037	Ga0326750_11037_3_176	F005148	MKQKKYQEFLKRNLPESEEVKCKKCELKFYDEWNLLSLSLLNMCLLCSNRNLDKQTIE
Ga0326750_11761	Ga0326750_11761_34_309	F052875	VVELAAAQELIAAVGPIGALVVIGAWWFATHQEKRNGVKDQTARLKARDAIIQISADVGHMKKDIADIKADGKTTATTLMQHVAQQHTRGR
Ga0326750_12619	Ga0326750_12619_121_339	F000161	MKKFTIEVSHASPAQLTTIALELKIIGNNWEKFGTQWIINGQKLQAPSLRIPGSSRKQQAASDKHHNMTTFI
Ga0326750_12676	Ga0326750_12676_2_349	F004794	MSGSWDIATATSIGTGVAKTQINGGNNVTKPTQAVNLVEVVPYISSSGAYTVAQSLAVTLEIDSFSVDLLPKRIIVPPIQSGKGTMVNTVNPILEAYECNTGLQEGATSQFIISGQ