3300034397: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S59 (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300034397
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135752 | Gp0348992 | Ga0326772
• Sample Name: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S59 (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19626752
• Sequencing Scaffolds: 9
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	1
Not Available	7
All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → microcosm → soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000025	Metagenome / Metatranscriptome	5578	Y
F001429	Metagenome / Metatranscriptome	696	Y
F001895	Metagenome / Metatranscriptome	620	Y
F002256	Metagenome / Metatranscriptome	577	Y
F003301	Metagenome / Metatranscriptome	494	Y
F011727	Metagenome / Metatranscriptome	287	N
F015442	Metagenome / Metatranscriptome	254	Y
F016913	Metagenome / Metatranscriptome	243	Y
F029607	Metagenome / Metatranscriptome	187	Y
F043723	Metagenome / Metatranscriptome	155	Y
F058597	Metagenome / Metatranscriptome	134	Y
F079511	Metagenome / Metatranscriptome	115	N
F093019	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0326772_03702	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	886
Ga0326772_04485	Not Available	815
Ga0326772_05714	Not Available	725
Ga0326772_09142	Not Available	578
Ga0326772_09216	Not Available	576
Ga0326772_09606	Not Available	565
Ga0326772_10022	All Organisms → Viruses → Riboviria → unclassified Riboviria → Riboviria sp.	553
Ga0326772_10621	Not Available	537
Ga0326772_11844	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0326772_03049	Ga0326772_03049_273_956	F079511	MEGAKQMVWQGVEKAKGMFSSNKPVTEQHPGKSYNWKKVTGEQGQTRWVATDDWSNDSARGTFWEKAKGVFTSNRDAKDSEFEQKQEFTAEGHEQKGVLQGAKEKVWQGVEKAKGMFSTPIEQHPGKGYTWKKVQGEQGRFHWVATNDWSGTPSGQPATGVSGVFQGAKEKVWQGVEKAKEVFSTKSTDTHDPHPGKGYKWKKVEGQKGEEAHWKPKTFQGLTGTHS
Ga0326772_03702	Ga0326772_03702_2_844	F002256	FDSADDLIENFKNDEFLQVLRTQAGIIKSDLSYVDTEGKVQVDTDMLSKLQKALIPVLADALKYIPVPRIYSCDKNREFWLDKIVLCSYDIIPENIRFHLESDSEVSFRDAEVKETQTYLVIELNRLLTELKDVEFYYKKKTFPELEDSGRVTFRVKGQGANLRLTYNVVQKPEDKVPRIMEGTASFDISDLDIIFDTSTLKHDVLVPMLTNMFKLQIKQQIEYQVENNLKGFMKNLGDMLTNSIGQTNRPFLSGLEQARKAVKSSQFGQIYEKRREKLE
Ga0326772_04485	Ga0326772_04485_53_814	F058597	MKHAILLALVAAAAVSAHEAYPSKTYGAVLPPHEHYDCDATDGKCYAPKSYGQGYEASGYSYKRQYPYPGPKARFCAKLKRLGAFIGGIINKIIKGFKHTWVHFKKHWKEHCAIIKSDLARFEDWKTCEAKKFKDWWGYHHDLCKTRKQLWDDAMREFHRQWCHYKKTRKEEYEARKKACGIKEKDYDDDSEYGKKLNHYGVTPVEDHYNNYSSGGKYKAEEYKSSCKKRDEKYSKANNGDLGMGPGSLPEPVE
Ga0326772_05714	Ga0326772_05714_368_724	F043723	MDKFLSLISSDDLARVLSGTFDLSQVPTDKHRSIFLMAAHCCLNGPVGTNKPTTFPLITGTTSITGFVGVRVSNNSWKAFCRDVAGVLMKSYPAIVSGSQQMAVAGGLWPLSKSISETR
Ga0326772_06704	Ga0326772_06704_8_670	F001895	MRVSYAGPQSSTSTYKATHDSGKYAAAGRGGTYRGAVTNATGPQSAHVAFQVTEDTGKYVGASATATTGYRVAGDIAGPTSAHQEFRVTEDTGKYVGASATATTGYRVAGDIAGPTSAHQEFRVTEDTGKYVGASATSTDGYRVAGDIAGPTSAHQEFRVTEDIGKYVGASATATDGYRVAGDIAGPTSAHQEFRVTEDIGKYVGASATATDGYRVAGDIA
Ga0326772_09142	Ga0326772_09142_365_577	F015442	MKGQSFQASERSLRGVGSEQEVLAGGLGSVDPQPSKDGGGESTKGRSGILFAKLSAGHAGGERGCDSDHLE
Ga0326772_09216	Ga0326772_09216_3_530	F001429	LSFKDVEVKGTKTKLVIKLDHLLTEIKNVEFYYRRKVFPEIEDSGRVTFRETGAGSRLTLTYDVLQKPEDKVPRIMEGHVDFDMSHLQIEFDTKTLKHDVLIPMLTKMFKLQIQQQIEDQVEKNLKGFLDKLGDMLTSAIGQTNKPFMSGLEAARNAIKNSPMGQIHEKRKEKLE
Ga0326772_09606	Ga0326772_09606_3_539	F003301	LALVYAQTKPVWPSAASASLLVQGWERPDDRQFLRWFFDDSAMKERFDGPTRYAGEFYFTETIIDTKSHREVTVIYQEDLLICLNRASNVSLPHPNFSTATYVGKAEIDYQIVDHWTIMANGRTLFEIYDRTTDQMIVRIDYNDPRRGHTLTYRFYEWDVGAQDPNLWNVPQDILAICV
Ga0326772_09742	Ga0326772_09742_2_562	F000025	LLAALLAVVYGQTKPMWPTAASTSLFVHGWEHRGDRHFIRWFFDRTLGKERFDGPREYRGEMYMTTTVLNTATMREYFIIHQGSLIECYERASNATIPHPDFARAHYVGKAEIGPDVVDHWTERTPEGRDRLQIFDRVDNGMVVRTDFDDERRGHAVTFEFHEWDTGSQDPNLFVIPSTILAICNTI
Ga0326772_10022	Ga0326772_10022_1_525	F016913	VLGDDIAAGKEETKASLQDWVKHCLDAGMKLKAHQRRLYCDLTFLSRFFVPIGTENCMIPLIGKALCRFNARANRNQDVSDAEYMAGKSLSYAYEFRHVSYLRDKFLQRFRSTGVTIDSIKLHDLTWFSRQDVSGSQDVLQAALDESLVLSDDEFLEIIMAKYDIGLYDMDYLCD
Ga0326772_10621	Ga0326772_10621_31_537	F093019	MEPDWLKCSQAEAQRHLKRALQRARPHADMTFKEFWRVIMRRNHSFRPVSKELKSYESPFYAVYALDVPTHDADKVCLFFKIFDGATLRYVGKRFGGPGHTLRTILRDYDLNTYALFEEVHSRRLDKIESVDISMSSMELGSGDVIVLCPRGFEEDLSQHYKSLVFTSK
Ga0326772_11309	Ga0326772_11309_2_445	F029607	MWWWEQLPSYGEFPSGAPVNLTAVPIGNHILIEGSMSCNGSYLYDTVTYTWSKLSPKTTTNDANYGSATLVGDTVYYLCGYRAHSHARDVIKLPLTSVLDFVNTGNVPDYMKESNSGEPMEEEMMGEEGKAVEVRSCSSGEGDFGIVN
Ga0326772_11844	Ga0326772_11844_22_507	F011727	MNLNDPALVVLLLGIIATAFFVASAAETDWSHFSNDSEGAKTGPFRAESGGTAYRYNKCNAGGGINWTGSDCSKWMTIQAFVIIGLVSAAIATIVDGCAATVAWRFPGGISSMLFVLATISGIIAMSLFAWFHNNRLTGSSYGPGFAFIIIAWLFSLFAAYI