3300034304: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S98 (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300034304
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135752 | Gp0348998 | Ga0326778
• Sample Name: Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S98 (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15888042
• Sequencing Scaffolds: 32
• Novel Protein Genes: 36
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1
Not Available	29
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Collembola	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → microcosm → soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000074	Metagenome / Metatranscriptome	2624	Y
F000187	Metagenome / Metatranscriptome	1693	Y
F000243	Metagenome / Metatranscriptome	1476	Y
F001024	Metagenome / Metatranscriptome	803	Y
F002212	Metagenome / Metatranscriptome	582	Y
F003046	Metagenome / Metatranscriptome	510	Y
F003262	Metagenome / Metatranscriptome	496	Y
F006338	Metagenome / Metatranscriptome	375	Y
F006379	Metagenome / Metatranscriptome	374	Y
F006780	Metagenome / Metatranscriptome	364	Y
F006831	Metagenome / Metatranscriptome	363	Y
F008538	Metagenome / Metatranscriptome	331	Y
F014939	Metagenome / Metatranscriptome	258	N
F015430	Metagenome / Metatranscriptome	254	Y
F016097	Metagenome / Metatranscriptome	249	Y
F022566	Metagenome / Metatranscriptome	213	Y
F022569	Metagenome / Metatranscriptome	213	Y
F023265	Metagenome / Metatranscriptome	210	Y
F026761	Metagenome / Metatranscriptome	196	Y
F029612	Metagenome / Metatranscriptome	187	Y
F029968	Metagenome / Metatranscriptome	186	Y
F030647	Metagenome / Metatranscriptome	184	N
F040406	Metagenome / Metatranscriptome	161	Y
F057752	Metagenome / Metatranscriptome	136	Y
F058597	Metagenome / Metatranscriptome	134	Y
F059632	Metagenome / Metatranscriptome	133	Y
F080714	Metagenome / Metatranscriptome	114	Y
F084948	Metagenome / Metatranscriptome	111	Y
F093012	Metagenome / Metatranscriptome	106	Y
F096368	Metagenome / Metatranscriptome	104	Y
F104188	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0326778_00724	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1348
Ga0326778_01304	Not Available	1124
Ga0326778_02408	Not Available	888
Ga0326778_03205	Not Available	789
Ga0326778_03316	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Collembola	777
Ga0326778_03627	Not Available	749
Ga0326778_04332	Not Available	696
Ga0326778_04716	Not Available	671
Ga0326778_04718	Not Available	671
Ga0326778_04826	Not Available	664
Ga0326778_04949	Not Available	657
Ga0326778_04985	Not Available	655
Ga0326778_05161	Not Available	645
Ga0326778_05406	Not Available	633
Ga0326778_05640	Not Available	622
Ga0326778_05856	Not Available	612
Ga0326778_05908	Not Available	610
Ga0326778_05947	Not Available	608
Ga0326778_06405	Not Available	589
Ga0326778_06508	Not Available	585
Ga0326778_06792	Not Available	575
Ga0326778_06890	Not Available	571
Ga0326778_06922	Not Available	570
Ga0326778_07017	Not Available	566
Ga0326778_07559	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	548
Ga0326778_08061	Not Available	533
Ga0326778_08318	Not Available	526
Ga0326778_08362	Not Available	525
Ga0326778_08502	Not Available	521
Ga0326778_08775	Not Available	514
Ga0326778_09202	Not Available	504
Ga0326778_09249	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0326778_00724	Ga0326778_00724_251_562	F096368	MILFLFEVIKTKPSGRTEFLGALLVVRVNVFHARTSRLSMYFVGWLNGEGDRDCGNSKELSESLSKKETRTFLRIDMVIGSGGVRGLYVVVVLVGVGWRRGVV
Ga0326778_00830	Ga0326778_00830_688_978	F104188	MNMMMIERALKGAVNDGKVFLTGVVASEMGCLEANENRGKYGATRSRHEGFGPGARNAIEKSAEHLGELGVTMIAGSGDFSSTRGNVRSKGAGMRV
Ga0326778_01304	Ga0326778_01304_274_1113	F093012	LPWVEDPQDILTFLDHHFDLATRLGRDHDEPIQNALRALAYASNEVTTKALEHFDPTAPSFVRGICYVYQRTKPFMLHKAALFFLPLIGDKWFNNPDLIMKPDEMKSLCADWASVVDGIEHTRDVQEATLAVLLGMINSPHWRPYIATEKWKLLECFSSVPDDSHPLRRCLDNPELIEAISGVGNPAAILLWLAILWLRWKELTPEVREQLEVVTKEIAQSRSADLNMYVSVMDVEVKKTEEALKKHCAWSTDPEAIALRRKVDNIQQAKDALLALKSG
Ga0326778_02408	Ga0326778_02408_54_821	F058597	MKHAILLALVAAAAVSAHEAYPSKVYGAVLPPHEHYDCDATDGKCYAPKSYGQGYEASGYSYKRQYPYPGPKARFCAKLKRLGAFIGGIINKILKGFKHTWVHFKKHWKEHCAIIKSDLARFEDWKTCEAKKFKDWWGYHHDLCKTRKQLWDDAMREFHRQWCHYKKTRKEEYEARKKACGIKEKDYDDDSEYGKKLNHYGVTPVEDHYNNYSSGGKYKAEEYKSSCKKRDEKYSKANNGDLGMGPGTLPEPVEG
Ga0326778_03205	Ga0326778_03205_124_654	F084948	MAMIFDLSREILNARLGRVPSRDRSEKSRRSRDIVSADTGNDFRLPRKSSKRLKGGYSFLELDDSPSQSEEIIAPEYDSHSQPIPPSLQLRRFSSSRRYDTPQDQLVQDLSVKLIAVVLPKQYPLPHRPDYRKIVNEDIRVRKLRGDKYNLSYCLPKTQVTPRPPSPLRQELARAS
Ga0326778_03316	Ga0326778_03316_84_614	F026761	MESKYFFVFAVLLGCSVSVFAAPNTVEDDKNVRDARQALEQASSQLSNNLIGALTSLANASSVAGTNVSRAAAIMVRGLLTDTFRLGGVVAYMPRLIFLDGPTQFVEVLRLIRSNQIRLPNDVDSAIDTLIAFANQYRDSNIGQNFNPAFTFLPNLFRGVGDFMVTLLDSLFAFIA
Ga0326778_03627	Ga0326778_03627_102_749	F014939	FGQSQSLCAAAFNQFDCGKASGPTYCCLWYRPAGNDNDAANRCIAGYTSNANDGSAGNTIPCPGAAAGSGSSSTYGGSCPATSICPGLNPPDISGTWFYPAQCGTIGGQFNVVVTGNNTNGPVTNTWAVRATQNQALRINPAITGTVNSIGQLQASQTDPTSGQVYTCTGTASNRQMNMVCPGSNCVTYFYRSAANAVTLSVLALVACLAFLALF
Ga0326778_04332	Ga0326778_04332_45_689	F006780	MMKILALSLFVIINCVIISESCTCTTTSQLEQFLSNSTNYPYVAEVQILSKVSNNGQYNDDLVRYRAQVITVFNGCLKTGKCPILLETQNNSATCGRPLDNAIGQTYVISFRPGSTSCKNSYGFGLCDYFALSSDLQSTDDMWLLNNWENDCLGVCATGKHVQCLTAPCNTAQAPSGCDTYQMPCTDNYCNGCNAIWWNNDGTMLCHSTAVPGQ
Ga0326778_04527	Ga0326778_04527_3_662	F000074	MRFNPSVNGGWCAWCQGNQVACTDKVMCDPPSPCYGAPGPQTIPTKYFSGYANLKDPSGNYWIEQTDGSSPEPVWCPGQSIEYAFFNNADHNGIYQFQLQPGKPGEEKETAFKAFTPWKSINNDPSTTYYAIDGVTPMKGGICSNGKAWSAETAHCKDNALWKSNFTIPSNLTPGNYILRWIWYGAMTLDLKRVNGPEPSLFCNCKDIIIGSSSQCNKQ
Ga0326778_04716	Ga0326778_04716_33_671	F040406	MQIFQTLALVAALATAVVAIPSPGGTYEPKYYSAEGYTPKSNSKDYGDYSAPVFEYPPIDERYKACVKHIGHEVHEAFHKIRAGLHELKVEIKDAWKSFWGKITGKANCLAAKLHVKWHKLKSDAARVKYWLKCKKVHFKHWAHYRKEVIAGKKKIYSKFVHDMLCSLKEFEAREKDAYEKRYKHCQGEKDTYAEVDEDYVVIVGRKYTDESG
Ga0326778_04718	Ga0326778_04718_59_526	F016097	MSLQVVIAFLGLAIAAAYGERVQCRESNGRFDCASIVPTSDLTAQNLYILWLKTGARTGDNALNIDVPNYQIQDVIQAAAKGGSGQSHTNINVNLARPDFSYLAQKEEKVGDVAQSFDVNLNYERINGKAVHFADDGQGSERYAPLRGNIAEPSG
Ga0326778_04826	Ga0326778_04826_20_580	F059632	MNIVLSTQDPLNTSVVNLETDETLFTVYTESKFMGGQTTVRRPSKIQTPSSSSGSNGDDSSEYVAQVDWHKTRPSIVRIGRRMMPLSMFLHNGRIRGAFGFSRTFVGPDEAKYVWKSKNNKLELYDKNERRLIAEAGSNELSLVVYEPGLMFLEHVVLTFLVIRKQKRSPFKTSPSFISEFSSKSF
Ga0326778_04949	Ga0326778_04949_25_657	F006831	MLQRFALSASVALAALPQFPLDWSSNQETFLVVKQGDFTVDDKGSYCCPEGSNCQVQTEYQQGIEYFSYTTNQTRFDDDISHQVIVTDYNIGKEMLMASGTNLTCVEYCPTQFPLDPYSLDKTAKDLGPVTISGKKYENYFWEEKILIFIVMEKVNVFVDQTDAAHPVPYIEKDELTPFGQDIGTANNTFTNFKPGKQDPSLFAVQGAQHC
Ga0326778_04985	Ga0326778_04985_10_618	F003262	MYHTATLVLLFISLVCAQKRPIWPKAASASVFVHGWGGPGERHFIRWFYDENTGFERVDGPRRFFGEEYWTTAILDSKQQKEWFIAYQRELVTCVTGPTNHTLPHPDFSTARYFGKSMIDYQVVDQWIERLPDGRDGVVVFDNEANGEIVRVDFHDFRRNHAVEFNFHEFDAGSQDPSLWVIPPAIINICNKRTAEWDDYSL
Ga0326778_05161	Ga0326778_05161_17_493	F016097	MSLRVVVAFLGLAVAVAYGERVQCRESNGRFDCVSVTPTSDLTAQNLYILWLKTGARTGDNALNIDVPNYQIQDVIQAAAKAGGGQSHTNINVNLARPDFSYLAQKEEKVGEVSQSFDVNLNYERINGKAVHFADDGQGSERYSPLSGSIAEPNGRRN
Ga0326778_05406	Ga0326778_05406_24_632	F014939	MKAVLLLLALVAAVAYGQAYSLCRGQFNVYDCGRASGPTYCCLWYRPAGNDNDANNQCIPGYTSNANDNAGQTIACPGTLTPAPVQGQSTFGGSCQPTSIFPAAIPDISGTWFYPAQCGTIGGQFSVQISGNSSAATTGSQTFRVVATQNQALRINSGIFGSINYLGQLQTTATDPISGQLYTCQGVASNRQMSISCPGSNCV
Ga0326778_05640	Ga0326778_05640_510_620	F001024	MRPKTPLAVENGVGKPAALRKQERQMSAWEREIGELP
Ga0326778_05856	Ga0326778_05856_294_611	F030647	FFSNDLGANFLLYLRTPRVRPEIETRLGCPVLNSDHVHLSDMTVYMTSSSVHLPFVIQHGGKIKPKIGPKVIHILLALEKLFSLLKFVVFIETCFPIKSSQPTTC
Ga0326778_05908	Ga0326778_05908_6_467	F006379	MSKYQKPEYKPPNHVSNIPVQKIQVDGSGQDRTYVPPDHTSNIPVAKIQVQSTGQEKTYVPPNHVSNIPVQKIQVDPSGQDRVYVPPDHTSNIPVAKIQVQSTGEKAYVPPDHVSDIPTIKEQPAVKGRLNYTPPNHQTGIPVVKEKPDYLGD
Ga0326778_05947	Ga0326778_05947_2_598	F008538	MLKSIKSAAGSAATKTGLEAAYLKNKTAKNGFQHVEEVAQWIVVLNRIRNQLTLKERLGKLLESYSGLIKDEDKGSTEFINLSADAQNAGVGQIFKVWGDAHHIVAQKRQGYSDELSRVKEEWKAIENVDLKNCTGLEEKANRTWSDKNYYVGHNDKDKIGPAEELYKTASSELVSAVRELDTKITGSYSIWFKRIAKA
Ga0326778_06405	Ga0326778_06405_265_558	F029968	LKCCGWENTIDTRTDAWGPTDCPIGYVYGWEEIPRLPGAWPPCLQATKDWLKKYLGPIAQAAIVLAVFQFVALTGSCFIIMVAKKDGDDFYSSPFHY
Ga0326778_06508	Ga0326778_06508_99_584	F080714	KGKRGETLKWNGTFELGGGASSSGSSQNLAPAAVTGEPAPEIDPKLQLRADVSLSLMEGNVFLKFTCTSDVLPEMVKSAALPKVSYQVFNVRDLRNLLKGPTWPILAPGWAALENSEGKWIKVADATSLPKVGVDWVQGKTTNFKFIFPIDPNAALPSVKD
Ga0326778_06792	Ga0326778_06792_3_575	F003262	VASLLFVLLAIANAQTRPTWPKAASASVFVHGWGGPGERHFVRWFFDKSSGFERLDGPRRFFGEEYWTSVILDTNKHTETFIAFQRDLVTCVVGPTNHTLPHPDFKDARFFGKSMIDYEVVDQWFERLPDGRDGVVVFDRETNGEIVRMDFHDPRRGHAVEFKFFELDAGSQDPSLWVIPPAIESICNKRT
Ga0326778_06854	Ga0326778_06854_19_561	F000187	MSEDRRARNKIIQGDVTGIPQKTLQDFASVFLYMCHPDGKGGDDLAVEKLSEGQLDKILKAINITVDDKKVTGKDMLREVGGRDLDFATYRDMMVARLKAQQPETVVRTQFEKFDEQKSGKIPMKEMEAALRKGSRRPLTEAQLEKLMSIKDISEHGNFVYGKFMTEFYGEKKGSSTDAV
Ga0326778_06890	Ga0326778_06890_35_571	F003046	PSAASSSVFIHGWGRPGERHFVRWFFDESAGFERLDGPRRFFDEDFWTEVFINHKTQTEYFIAYQRDLVTCSYGPTNHTLPHPDFTNARYIGQSLIDYEVVNNWIERLPNGMDGMTVFSRASNGEVVRLDFHDFRRGHAVEFKFMELDAGSQDPSLWVIPPAIMQICNKRPDNTAYTW
Ga0326778_06922	Ga0326778_06922_55_522	F016097	MSLQVVVAFLGLAIAAAYGERVQCRESNGRFDCVSIVPTSDLTAQNLYILWLKTGARTGDHALNIDVPNYQIQDVIQAAAKGGSGQSHTNINVNLARPDFSYVAQKEEKVGDVAQSFDVNLNYERINGKAVHFADDGQGSERYAPLRGNIPEPSG
Ga0326778_07017	Ga0326778_07017_13_561	F023265	MLLFVLAVLALASAQTPPKFSDDFTADVKLDLQNGHRERHLEGTWYNDFTGKRERFDTQLPGLGRVDEYRIWNTTHGGMEYIFDWPRQVCHGRAFSEPIFGLFDFLPHTKQQGNCDGTANLWVANVSNTFEMLACVTKDNLTPLWVERKIYVEQRHHVIVRFHTYKAGRPSPSQFTLPSICK
Ga0326778_07559	Ga0326778_07559_1_534	F000243	MKLFLLVASATAAPLVTTLLPEFANPPVMTTLLPEFAHPRVMTTLMPEFASPNSGVYFDRTINTIAHATGSAAFDKGCAATDPYGSNKCTWDWKEAITASYQGALQEDITSGKLVVDLKINNVIPFSFSCPICGANCTFEIPIIKKPETIKMPPCPIKATTIPPTKTPFTLPDKNPLG
Ga0326778_08061	Ga0326778_08061_59_526	F016097	MSLQVVVAFLGLAIAAAYGERVQCRESNGRFDCVSIVPTSDLTAQNLYILWLKTGARTGDHALNIDVPNYQIQDVIQAAAKGGSGQSHTNINVNLARPDFSYTAQKEEKVGDVAQSFDVNLNYERINGKAVHFADDGQGSERYAPLRGNIPEPSG
Ga0326778_08318	Ga0326778_08318_10_429	F022566	VPKTYKPKPVHNPLGGKLALVAAGFFERAYGLNGQPRIEHTKLKEEMMALTGCSERAVQAVLYGSSYSDLLDGLRAKVPGYVSQKDMQQDFTLLPFYHFDGNTQETPTATPSTEEKTATNYSTIALLALAAILPFTLLC
Ga0326778_08362	Ga0326778_08362_405_524	F006338	MLGGPATRPKTPLAVANSVGKLAAAEMWRQMPARERELGE
Ga0326778_08362	Ga0326778_08362_6_320	F057752	LLLWISTDGRLWRSRKKADQPKEKRRKAEQNERSDREGHEVSAEPVKTFQNVGDVKNAPLTCERKSNLRVKRRDPWHRVNALPKAVAVLVQNGKDAERKIAAVS
Ga0326778_08502	Ga0326778_08502_2_493	F029612	MKALLVIVIAVLCITTHAKLNGNLITPRSSAEIPHSWAYPQYTTPDSNDNTDSLLRGYTRPRFVDVEADVAPSRRLPPLPSIPSLDNYRFSTRRQKGPIPSAMPANPLPPAMAAAASIAAADGALQTPGFAGYNVNTFPVEFPDPKTDPPVSYYSDGTPKPMNM
Ga0326778_08775	Ga0326778_08775_32_514	F022569	MTSTIATKNVEVKLAAKEQEEKERERQLSGEQQSYRLREVQDLAMQLRLLLIEGQLPGPEALTPVLLKAEEMLAKFQLRTDMEPETRQVIEDIAALVVTARQMDRNKGISDRLQRIAEESQKAMETMKRSGVPSDTKQASQDALDFINNWRPVFNLLSRSR
Ga0326778_09202	Ga0326778_09202_2_487	F002212	MLKTAAALSLALVQGADPVNLCMPKVFTVHVSAFRDVEHTQEHQPPDEFRAGDEIQVFFDQNAQKSLVWIHDDGPHQPWQQPDHGQLTDYTKQLQWNWNWVNKTVQRCTLQVQTRPMATPCFAPPSNLTGSGTIGEDYKVDFYGARVQDPTRQIDEQVWTIV
Ga0326778_09249	Ga0326778_09249_70_501	F015430	MLTAIVLASCLAFAFGADICQPDQKTLYWTPTCTGQTFENRITATNVTVMQNGQLVDDRGGLDLEVPINIIATIVNNYGTTTTPKVDLLIYQYAIPDGGTTCTWNQLPTFGMLSDLDACTMIENCHMTGLPTTLKATVDVKSIA