3300034171: Cryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CB1 2018

Overview

Basic Information

• IMG/M Taxon OID: 3300034171
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133511 | Gp0330627 | Ga0314773
• Sample Name: Cryopeg brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - CB1 2018
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 338896896
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gillisia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extreme Environments Viral Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Cryopeg Brine → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → area of sea ice → brine
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2944
  • Long. (^o): -156.7153
  • Alt. (m): N/A
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027599	Metagenome / Metatranscriptome	194	Y
F034190	Metagenome / Metatranscriptome	175	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0314773_055271	Not Available	1165
Ga0314773_066534	Not Available	991
Ga0314773_071561	Not Available	929
Ga0314773_086684	Not Available	780
Ga0314773_091442	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Gillisia	741

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314773_055271	Ga0314773_055271_70_918	F034190	VLQHLIDTRSAFLNGDWCFINAVLGLMSPSATHPCPICIVSHKNYLHAARYRTPHDRHSLDRTHSPLLIIPPERIVPTPLHLFLGISNRIILDAFSELLGEAVVLEAVQRTKTVHSAGCTGASDLRDLNGPEISKFIKKECSMSALAAAGALSPVADSTKASHSVLSRWLQQLHHSLLRSGDWTADDIDTWRSVVDDIQQHWQSEAHSAPFPKLHMLRHSIDFAERHRFLGRASEAQIESYHASFNALFHKQHRNMSSNTAERLRRSLADAALHAVQPFVQQ
Ga0314773_066534	Ga0314773_066534_3_485	F034190	AVLYDLNGPEISKFIKKECSTDILAAAGATTTITDSMKASHSLFSRWLQQLHHSLLHSGDWTPAHIDAWRTAVDDIQQHWQSEAHSKPFPKLHMLRHTVEFAERHRFLGRASESQTESCHATLNALFHKQHRNQSHNVSERLRRCLADASLRAVQPFLQQ
Ga0314773_071561	Ga0314773_071561_301_924	F034190	VPTPLHLFLGISNRIILDALSELLGKERVEAALKAVTTVHSAGCGGKSDLHDLNGAEISKWIKKECSASVLAAAAASSPLPASTTATHSILSRWLTQLHHSLLHAEDWAASDIDAWSSVVNDIQQHWQAEVHSAPFPKLHMLRHTVDFAERHRFLGRASEAQIESFHASFNALFHRQHRNQSSNTAERLRRSLADATLRAVQPFASS
Ga0314773_086684	Ga0314773_086684_2_754	F034190	VGGDAGGGRCVLGVTYSIPSRYRTSADKHSCHPQQSALLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVEAALKPVTTVHSAGCTGKSDMFDLNGPEIRKWIKRGCSESLLAAAAATSALPAATRATHSILSRWLEQLHDFLLHKGVWNSDDIESWRSVVDDIWQHWCAETSQAAFPKLHMLRHSLEFAERHRFLGRASEAQIESFHAQFNTLFHDHHLNQGSNTSERMRRSLADAALRAVQLCL
Ga0314773_091442	Ga0314773_091442_3_230	F027599	EIFGVVKAVPVPKLDPPVAAAYQLIVPAEAVAPRTTVPVPHRDPGVDPVIVGMALTVAIIADLEPVVQPFEVAST