3300034032: Biocrust microbial communities from Mojave Desert, California, United States - 50SNC

Overview

Basic Information

• IMG/M Taxon OID: 3300034032
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136120 | Gp0356270 | Ga0334954
• Sample Name: Biocrust microbial communities from Mojave Desert, California, United States - 50SNC
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 222548454
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Biocrust Microbial Communities From Mojave Desert, California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003495	Metagenome / Metatranscriptome	483	Y
F008145	Metagenome / Metatranscriptome	338	Y
F018295	Metagenome / Metatranscriptome	236	Y
F027599	Metagenome / Metatranscriptome	194	Y
F042189	Metagenome	158	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334954_002857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.	2379
Ga0334954_029531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	835
Ga0334954_053198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	649
Ga0334954_067914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584
Ga0334954_079380	Not Available	547
Ga0334954_086858	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334954_002857	Ga0334954_002857_2129_2377	F018295	MTTSHLIGGNEASDFPKDSEAEADNKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAQDSISNKNDAARRDFTE
Ga0334954_029531	Ga0334954_029531_144_383	F027599	VVVAEIEGVLNVVPVPRETPPVDAANQLIVPADAVASSETVPVAHRLSGPVLVIVGMAFIVAITGVLELVVHPFAVASA
Ga0334954_053198	Ga0334954_053198_3_452	F042189	VPDLYEVLLVDGGRRWHAGFLVDDETETDVLLRERGKVLLFGSRAALEHHARQHDWQLQDDLPDEIDLDLGGWLSQGMPLPPTAEVSELWHLLYDDPVAGRALGGEALGEAYDDLVEEAPDWFATHGPAARRALADAVQRLRGVLSPPS
Ga0334954_067914	Ga0334954_067914_1_582	F008145	EVASSIDAHVREEIDRMVAEIRSSVEDVRAVVDSQLKAALQSVQADVNALTFLPHVRKSIAELEESIAAAQPAPVAAPAASGGSDASRVKRAIQQVERGKAQVDVLNALLDQCLEFGSRAALLILKGETFSGWKGAGFSAHGGNDETIKRFNAAPGLIPELDQVLRNEQVVTWDGVNLATRFGVPASSQAVLVP
Ga0334954_079380	Ga0334954_079380_1_123	F003495	MDRSLVNRMKENNEKKMENCDEISKLIKAFPKDIAALDKRS
Ga0334954_086858	Ga0334954_086858_2_121	F003495	MKENNEKKMENCDEISKLIKAFPKDIAALDKRSVLAKVNS