3300033998: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-1

Overview

Basic Information

• IMG/M Taxon OID: 3300033998
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324323 | Ga0310133
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 203557508
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Alt. (m): N/A
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001938	Metagenome / Metatranscriptome	614	Y
F022008	Metagenome / Metatranscriptome	216	Y
F038199	Metagenome	166	Y
F063614	Metagenome / Metatranscriptome	129	Y
F066897	Metagenome / Metatranscriptome	126	Y
F077200	Metagenome / Metatranscriptome	117	N
F082560	Metagenome	113	N
F087072	Metagenome / Metatranscriptome	110	Y
F088079	Metagenome / Metatranscriptome	109	N
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310133_000747	All Organisms → cellular organisms → Bacteria	32384
Ga0310133_001229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	21112
Ga0310133_001366	Not Available	19410
Ga0310133_002358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11764
Ga0310133_003258	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	8580
Ga0310133_003841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	7191
Ga0310133_004965	Not Available	5514
Ga0310133_006523	All Organisms → Viruses → Predicted Viral	4168
Ga0310133_015801	All Organisms → Viruses → Predicted Viral	1837
Ga0310133_021227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus odorifer	1411
Ga0310133_028067	Not Available	1086
Ga0310133_039808	All Organisms → cellular organisms → Bacteria	772

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310133_000747	Ga0310133_000747_30002_30346	F082560	VSEKLIVKKIQEWFKAKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKVKRNEVPQEMQEWLAMGATMLQAKTLYDWQKAGAIVLVATSIEDMEQKFKEGQI
Ga0310133_000747	Ga0310133_000747_31628_31954	F066897	MSSKWFWLIIIAVVLLSAVFIWHNHTSTQDMLLKAQETIKETQEALKESQEALLKLDKIAQEIKDVSQIAEKAGDEYVKEIRFVSDDEFLDKLNTYSTVMVERVKQLE
Ga0310133_001229	Ga0310133_001229_607_861	F087072	MKSKIFTKRIFLLELSEEELSIIAGALYCANNEDIKCFVDKYKYPCSKNTLDEVTELQERLSEEINKLIENIKLDNLFDEFEIV
Ga0310133_001366	Ga0310133_001366_466_726	F088079	MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFVHICEIYKVDITFFKSNTVSTK
Ga0310133_002358	Ga0310133_002358_3086_3418	F101010	MILFNNIYATVWSVEDKGNYVKGRISTSEKNKEGEYVNSNWFVTFVGKAKEPALALSTRDRIKIISGKISNTTTGEGKDKKSYLNVVVFDFENLSNSQNESNDNFDDLPF
Ga0310133_003258	Ga0310133_003258_6444_6704	F088079	MLIEKAIWLENVPFRSIDEAIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTKLGIFIHICEIYKVDITFFKSNVVSTK
Ga0310133_003841	Ga0310133_003841_843_1247	F099151	MRFREETFKENGQIIKKYYIDDKEVSQDVYYSLTDELYENTKLKQEEHVDEICNCEECQYYLDLIHAIKESDYSEALEILRQEIEFRVQEAYMEGQHVLANELGNSLLKHAVKLEDELENLYENGSFDEYNEDG
Ga0310133_004965	Ga0310133_004965_4266_4484	F087072	MKSKIFTKRMFLLELTEEELGIIAGALYCANNEDIKCFVDKYKYPCNGYSFDEVAELQEKLCEEINRLIENK
Ga0310133_006523	Ga0310133_006523_232_471	F063614	MNRRFKKMTYKRLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELEEIMAELPLLKRV
Ga0310133_015801	Ga0310133_015801_1547_1837	F022008	MTITEIEALREALTDLSKQLQTLSDESRTSFGRIYDRLTKIETQMSEREHQFNRYEKTIENHEMRIRTVEGELGALRDVPEKLWKVSMSNSKLTGMV
Ga0310133_021227	Ga0310133_021227_1161_1409	F038199	MEYTQAEFLQIIQQYNSTDRRVIKTNLKRIMNIYNIKPADITALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFL
Ga0310133_028067	Ga0310133_028067_1_633	F077200	MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQG
Ga0310133_039808	Ga0310133_039808_143_322	F001938	MIEKIYKNKYMATCDNCGTGQECDSWADVMDFMNEEGWKKRLVDGEWKHFCPDNSFSLL