3300033752: WT metagenomes combined assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300033752
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0135754 | Gp0325893 | Ga0373396
• Sample Name: WT metagenomes combined assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 438838924
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Plant Biomass → Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.8406
  • Long. (^o): -122.2901
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014042	Metagenome / Metatranscriptome	266	Y
F014187	Metagenome	265	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0373396_003720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16507
Ga0373396_062638	Not Available	950

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0373396_003720	Ga0373396_003720_3745_3912	F014042	MRDVGYVAAGYAVALVMLGAYRWRLAVRTRRARRYLSTATGRTGPATGRTGAGWR
Ga0373396_062638	Ga0373396_062638_166_381	F014187	VRIEQTRANVFTVVATGQELAALVAGARMSLDVMRRAPQPPPAEAVETLERVLRDFDRARGRLGGDDPPAG