3300033554: Glacier ice microbial communities from Ngari, Tibet, China - 37_GP2_109.2

Overview

Basic Information

• IMG/M Taxon OID: 3300033554
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133511 | Gp0348944 | Ga0326735
• Sample Name: Glacier ice microbial communities from Ngari, Tibet, China - 37_GP2_109.2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 365686799
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Extreme Environments Viral Communities From Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Ice → Glacier → Ice → Extreme Environments Viral Communities From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → glacier ice field → ice
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: China: Ngari, Tibet
• Coordinates
  • Lat. (^o): 35.2833
  • Long. (^o): 81.4833
  • Alt. (m): N/A
  • Depth (m): 109

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038578	Metagenome / Metatranscriptome	165	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0326735_1085577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	892

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0326735_1085577	Ga0326735_10855772	F038578	MSEELVVLRGGSRDGESTRVQDGVRRILAASDAPGLLDVYEANGETAELAGNDELALVMIHVGQEPAGDDPGLPRGLE