Sample 3300033175

Overview

Basic Information
IMG/M Taxon OID	3300033175 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0136119 \| Gp0356206 \| Ga0334890
Sample Name	Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	536854289
Sequencing Scaffolds	17
Novel Protein Genes	17
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	4
All Organisms → Viruses → Predicted Viral	1
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
Type	Engineered
Taxonomy	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	Netherlands: Wageningen, Gelderland
Coordinates	Lat. (^o)	51.9691	Long. (^o)	5.6654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F029922	Metagenome / Metatranscriptome	187	Y
F035532	Metagenome / Metatranscriptome	172	N
F039153	Metagenome / Metatranscriptome	164	Y
F046465	Metagenome	151	Y
F054063	Metagenome / Metatranscriptome	140	N
F059692	Metagenome / Metatranscriptome	133	N
F061390	Metagenome / Metatranscriptome	132	Y
F070092	Metagenome	123	N
F072892	Metagenome	121	N
F074119	Metagenome / Metatranscriptome	120	N
F088360	Metagenome	109	Y
F089495	Metagenome / Metatranscriptome	109	N
F095527	Metagenome / Metatranscriptome	105	N
F098758	Metagenome / Metatranscriptome	103	N
F104571	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F029922

Metagenome / Metatranscriptome

187

F035532

Metagenome / Metatranscriptome

172

F039153

Metagenome / Metatranscriptome

164

F046465

Metagenome

151

F054063

Metagenome / Metatranscriptome

140

F059692

Metagenome / Metatranscriptome

133

F061390

Metagenome / Metatranscriptome

132

F070092

Metagenome

123

F072892

Metagenome

121

F074119

Metagenome / Metatranscriptome

120

F088360

Metagenome

109

F089495

Metagenome / Metatranscriptome

109

F095527

Metagenome / Metatranscriptome

105

F098758

Metagenome / Metatranscriptome

103

F104571

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0334890_1018740	All Organisms → cellular organisms → Archaea → Euryarchaeota	3611	Open in IMG/M
Ga0334890_1019213	All Organisms → cellular organisms → Archaea → Euryarchaeota	3531	Open in IMG/M
Ga0334890_1030322	All Organisms → Viruses → Predicted Viral	2357	Open in IMG/M
Ga0334890_1031144	Not Available	2305	Open in IMG/M
Ga0334890_1031605	All Organisms → cellular organisms → Archaea → Euryarchaeota	2277	Open in IMG/M
Ga0334890_1039309	Not Available	1894	Open in IMG/M
Ga0334890_1048175	Not Available	1603	Open in IMG/M
Ga0334890_1048565	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1592	Open in IMG/M
Ga0334890_1049415	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1569	Open in IMG/M
Ga0334890_1052730	All Organisms → cellular organisms → Archaea → Euryarchaeota	1491	Open in IMG/M
Ga0334890_1085804	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1006	Open in IMG/M
Ga0334890_1094243	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276	934	Open in IMG/M
Ga0334890_1116457	Not Available	786	Open in IMG/M
Ga0334890_1120913	Not Available	763	Open in IMG/M
Ga0334890_1178947	Not Available	555	Open in IMG/M
Ga0334890_1187979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	533	Open in IMG/M
Ga0334890_1201397	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0334890_1018740

All Organisms → cellular organisms → Archaea → Euryarchaeota

3611

Open in IMG/M

Ga0334890_1019213

All Organisms → cellular organisms → Archaea → Euryarchaeota

3531

Open in IMG/M

Ga0334890_1030322

All Organisms → Viruses → Predicted Viral

2357

Open in IMG/M

Ga0334890_1031144

Not Available

2305

Open in IMG/M

Ga0334890_1031605

All Organisms → cellular organisms → Archaea → Euryarchaeota

2277

Open in IMG/M

Ga0334890_1039309

Not Available

1894

Open in IMG/M

Ga0334890_1048175

Not Available

1603

Open in IMG/M

Ga0334890_1048565

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia

1592

Open in IMG/M

Ga0334890_1049415

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia

1569

Open in IMG/M

Ga0334890_1052730

All Organisms → cellular organisms → Archaea → Euryarchaeota

1491

Open in IMG/M

Ga0334890_1085804

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium

1006

Open in IMG/M

Ga0334890_1094243

All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276

934

Open in IMG/M

Ga0334890_1116457

Not Available

786

Open in IMG/M

Ga0334890_1120913

Not Available

763

Open in IMG/M

Ga0334890_1178947

Not Available

555

Open in IMG/M

Ga0334890_1187979

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094

533

Open in IMG/M

Ga0334890_1201397

All Organisms → cellular organisms → Bacteria

504

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0334890_1018740	Ga0334890_10187402	F095527	MNKTIKISLLILIPTLLILSLPIGILSEDYESATTSAISYLERIDPENPYLLLAKDTAVTNPKMSINFALKGIIESDRGNKEENLNKALEIMNSLKLIPEDRKDMFNVLILEYNLTRSQKYIEDAAETSNLRYIANSGEYIKQANEDLNEVKGNGLDETQAKLKIISETYMGQSSNYSNLYKEMALISYDEHRYLATTLFSIYAKNDDQIFDESLEVILTRFENEWNSFFGSDVYKGSPFSPDSLKELQRKAITYRGQGNEDFANVITEYIKFQAMSYTEFINAIEEGGL
Ga0334890_1019213	Ga0334890_10192134	F054063	MKLRFTQVIMNAWLYGVESTANVFFDKPKLFYRKWGTIAIRPFIESWGELGMEFKKGLSPYNTVKMFIDALVSAQFFNPDDFEFKGDDKNFSFKAIQCPYKAHCMKLIGEQKEIACLRAITLLGALDYDIEGESLKYTYNFEFNENAPCIVSFERFKD
Ga0334890_1030322	Ga0334890_10303221	F104571	MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYANTGNYQLTIKPIIGNESGKVLLFLQTSLPKIIHGENYQALNNDETMQAIDVIADDLNNRGVGVNLQECKTSRIDLFRMASANNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQRELCVYDKATEMRNRGVKASALPTNAIRFEYRLKTSKVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYSKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLF
Ga0334890_1031144	Ga0334890_10311445	F089495	MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVATGKYAIDQWFANHKEGTGTTALVTTNDGSAYLKKSIDGTTISANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334890_1031605	Ga0334890_10316053	F054063	MDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIRPFIESWNDLGMDFQKGLSPFNTAKMFVDALVKAEFFNSADFEMAGDDINFTFKAINCPYKSHCSRLIDERKEIACLRAITLLGAMEYNKEGESLKYMYKFEFNKENPCLVSFEKFKD
Ga0334890_1039309	Ga0334890_10393095	F029922	LAKSIDVLDKRMISCLPTLSRKELYNFNIIELSEMIMAIEHAIRYTEGYRFLLLCFGNEGSSDKAKMIMKGMEDYLELVKDVYRFKVNEKKKRMAFLKGEIY
Ga0334890_1048175	Ga0334890_10481752	F074119	MSEIQVFEVLAKILPYLVSLGIGTFAGWELVKTKIHELAEFFKTVDEALYDDAVTEKEFRDIWEKGRALFGTGMKKGAE
Ga0334890_1048565	Ga0334890_10485653	F039153	MTPAATKQYNTTVLFLNNSHGARRLNFSPLHKEIKKWAKHQGYSAKLYLRSAAIECNNPDLPKESELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEYNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERA
Ga0334890_1049415	Ga0334890_10494151	F039153	MLYSVITPEREKKYHTEVKFFNNSKQASRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDRPKESELLVVDLIQIIANGQAYLVAIDTLGPSENHLHFILEEHAKLRKAIYVTAECLDDVICEIKDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERS
Ga0334890_1052730	Ga0334890_10527301	F098758	MDKIRARNVGIIILISVLILFSGCSKPKEEPPPIITDPCENVECPDVCKGNDLWSQKCVDGECVDFVRIEPCSENCGCVVDLCQRIKCNDQCRSEDLWAYKCVNGICTPESIKETCAIECGCAPKFFYKLVPLARYRLREVGIIANVYSIRSDQLIRAVVTCRTSLCTDPPTVYYTKFDDPFERSEDETVDYFGPLWKNFEVMQGYELTVDEGGTYMIGVSNQYYIEVGFLSDT
Ga0334890_1085804	Ga0334890_10858043	F061390	LEETTGREGSVGMVTISNKEAERLDRLVTQYGQRTVMEALEAKMMGNWSVIYFPDVDSWEVSDYGDRNFVIKDGGKCNCGKGFGKNGSCIHQVLVELKKWDLEDELGVE
Ga0334890_1094243	Ga0334890_10942433	F059692	MDKETEQLILKKLQLDYLSLHAILTDLEKIISALVVDLDPRVNEIQRIQDQIRVYLREP
Ga0334890_1116457	Ga0334890_11164571	F070092	MELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334890_1120913	Ga0334890_11209133	F072892	LLKTVSTRLFGLYSQFKSIVSDLEANNTLDNREWAHELLNHLSAELYYEANCLTDVLFPPKIKEKDETMFKIDGIINAERNPMSEDEFCELFLKWAEENKLEFGGSIGSYREEEEDVLAG
Ga0334890_1178947	Ga0334890_11789471	F046465	MKDWTDEPIDPAVWKRVPGNPFADYDPADGIALWSLWEMPSCAVGKLVRRGRPRGEPTAVRSVRLPVATWKRLESEAAEAATSVNELIRKRIG
Ga0334890_1187979	Ga0334890_11879791	F088360	VTVAAWRRSRAWNRRSPSMTRHDRQFIGRLAVVVFMLGGLAWQVYEGYRAATYPAIDTGGVNAGELVALPMLLLPPALFVAGIALELSSGSHRVAWGLLALLCAAGSAYNLAVALTGTVTNLNLAAYLLLAVLAILAVPRAFSSGKMGWSRSATPAVY
Ga0334890_1201397	Ga0334890_12013971	F035532	LRMSFDPIAFLENVERIFAQASGLSSVKTWSRPTKLSTSLETPGVAIEMIAGNIDSISLSYPNKQIEFYVRFVIFEEQTLSTSKMGTIYSGIINTVRSNPDLKNKSGSATCDYFGTFYGRNISFDLAATERNGVSVNAMKIDVPCLVRDI

Scaffold ID

Protein ID

Family

Sequence

Ga0334890_1018740

Ga0334890_10187402

F095527

MNKTIKISLLILIPTLLILSLPIGILSEDYESATTSAISYLERIDPENPYLLLAKDTAVTNPKMSINFALKGIIESDRGNKEENLNKALEIMNSLKLIPEDRKDMFNVLILEYNLTRSQKYIEDAAETSNLRYIANSGEYIKQANEDLNEVKGNGLDETQAKLKIISETYMGQSSNYSNLYKEMALISYDEHRYLATTLFSIYAKNDDQIFDESLEVILTRFENEWNSFFGSDVYKGSPFSPDSLKELQRKAITYRGQGNEDFANVITEYIKFQAMSYTEFINAIEEGGL

Ga0334890_1019213

Ga0334890_10192134

F054063

MKLRFTQVIMNAWLYGVESTANVFFDKPKLFYRKWGTIAIRPFIESWGELGMEFKKGLSPYNTVKMFIDALVSAQFFNPDDFEFKGDDKNFSFKAIQCPYKAHCMKLIGEQKEIACLRAITLLGALDYDIEGESLKYTYNFEFNENAPCIVSFERFKD

Ga0334890_1030322

Ga0334890_10303221

F104571

MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYANTGNYQLTIKPIIGNESGKVLLFLQTSLPKIIHGENYQALNNDETMQAIDVIADDLNNRGVGVNLQECKTSRIDLFRMASANNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQRELCVYDKATEMRNRGVKASALPTNAIRFEYRLKTSKVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYSKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKLF

Ga0334890_1031144

Ga0334890_10311445

F089495

MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVATGKYAIDQWFANHKEGTGTTALVTTNDGSAYLKKSIDGTTISANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL

Ga0334890_1031605

Ga0334890_10316053

F054063

MDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIRPFIESWNDLGMDFQKGLSPFNTAKMFVDALVKAEFFNSADFEMAGDDINFTFKAINCPYKSHCSRLIDERKEIACLRAITLLGAMEYNKEGESLKYMYKFEFNKENPCLVSFEKFKD

Ga0334890_1039309

Ga0334890_10393095

F029922

LAKSIDVLDKRMISCLPTLSRKELYNFNIIELSEMIMAIEHAIRYTEGYRFLLLCFGNEGSSDKAKMIMKGMEDYLELVKDVYRFKVNEKKKRMAFLKGEIY

Ga0334890_1048175

Ga0334890_10481752

F074119

MSEIQVFEVLAKILPYLVSLGIGTFAGWELVKTKIHELAEFFKTVDEALYDDAVTEKEFRDIWEKGRALFGTGMKKGAE

Ga0334890_1048565

Ga0334890_10485653

F039153

MTPAATKQYNTTVLFLNNSHGARRLNFSPLHKEIKKWAKHQGYSAKLYLRSAAIECNNPDLPKESELLVVDLIQIIANGQAYLVAIDTLGPSENNLHFILEEHAKLRKAIYVTAECLDDVICEIQDNEYNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERA

Ga0334890_1049415

Ga0334890_10494151

F039153

MLYSVITPEREKKYHTEVKFFNNSKQASRLNFSPLHKEIKQWAKSQGYTPKLYLRSVAIECNNPDRPKESELLVVDLIQIIANGQAYLVAIDTLGPSENHLHFILEEHAKLRKAIYVTAECLDDVICEIKDNEHNHKGVPCVPDIKSRRSFQGDYSILFSPENLTWKTARNERS

Ga0334890_1052730

Ga0334890_10527301

F098758

MDKIRARNVGIIILISVLILFSGCSKPKEEPPPIITDPCENVECPDVCKGNDLWSQKCVDGECVDFVRIEPCSENCGCVVDLCQRIKCNDQCRSEDLWAYKCVNGICTPESIKETCAIECGCAPKFFYKLVPLARYRLREVGIIANVYSIRSDQLIRAVVTCRTSLCTDPPTVYYTKFDDPFERSEDETVDYFGPLWKNFEVMQGYELTVDEGGTYMIGVSNQYYIEVGFLSDT

Ga0334890_1085804

Ga0334890_10858043

F061390

LEETTGREGSVGMVTISNKEAERLDRLVTQYGQRTVMEALEAKMMGNWSVIYFPDVDSWEVSDYGDRNFVIKDGGKCNCGKGFGKNGSCIHQVLVELKKWDLEDELGVE

Ga0334890_1094243

Ga0334890_10942433

F059692

MDKETEQLILKKLQLDYLSLHAILTDLEKIISALVVDLDPRVNEIQRIQDQIRVYLREP

Ga0334890_1116457

Ga0334890_11164571

F070092

MELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG

Ga0334890_1120913

Ga0334890_11209133

F072892

LLKTVSTRLFGLYSQFKSIVSDLEANNTLDNREWAHELLNHLSAELYYEANCLTDVLFPPKIKEKDETMFKIDGIINAERNPMSEDEFCELFLKWAEENKLEFGGSIGSYREEEEDVLAG

Ga0334890_1178947

Ga0334890_11789471

F046465

MKDWTDEPIDPAVWKRVPGNPFADYDPADGIALWSLWEMPSCAVGKLVRRGRPRGEPTAVRSVRLPVATWKRLESEAAEAATSVNELIRKRIG

Ga0334890_1187979

Ga0334890_11879791

F088360

VTVAAWRRSRAWNRRSPSMTRHDRQFIGRLAVVVFMLGGLAWQVYEGYRAATYPAIDTGGVNAGELVALPMLLLPPALFVAGIALELSSGSHRVAWGLLALLCAAGSAYNLAVALTGTVTNLNLAAYLLLAVLAILAVPRAFSSGKMGWSRSATPAVY

Ga0334890_1201397

Ga0334890_12013971

F035532

LRMSFDPIAFLENVERIFAQASGLSSVKTWSRPTKLSTSLETPGVAIEMIAGNIDSISLSYPNKQIEFYVRFVIFEEQTLSTSKMGTIYSGIINTVRSNPDLKNKSGSATCDYFGTFYGRNISFDLAATERNGVSVNAMKIDVPCLVRDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033175: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_31_08-R1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences