3300033163: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_8_08-R3

Overview

Basic Information

• IMG/M Taxon OID: 3300033163
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356215 | Ga0334899
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_8_08-R3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 330707143
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276	1
All Organisms → cellular organisms → Bacteria → Atribacterota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F028538	Metagenome / Metatranscriptome	191	Y
F055545	Metagenome	138	Y
F059653	Metagenome / Metatranscriptome	133	Y
F059692	Metagenome / Metatranscriptome	133	N
F065263	Metagenome	128	Y
F066219	Metagenome / Metatranscriptome	127	Y
F070092	Metagenome	123	N
F082560	Metagenome	113	N
F089495	Metagenome / Metatranscriptome	109	N
F093482	Metagenome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334899_1004096	All Organisms → cellular organisms → Bacteria	9587
Ga0334899_1008344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	5255
Ga0334899_1009005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4923
Ga0334899_1012705	All Organisms → cellular organisms → Bacteria	3649
Ga0334899_1018957	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	2569
Ga0334899_1019381	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	2517
Ga0334899_1020832	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2362
Ga0334899_1027143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1854
Ga0334899_1028127	All Organisms → cellular organisms → Bacteria	1790
Ga0334899_1034557	All Organisms → cellular organisms → Bacteria	1481
Ga0334899_1048874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1077
Ga0334899_1049008	Not Available	1075
Ga0334899_1050505	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium ADurb.Bin276	1046
Ga0334899_1061462	Not Available	876
Ga0334899_1089144	Not Available	628
Ga0334899_1099714	All Organisms → cellular organisms → Bacteria → Atribacterota	570
Ga0334899_1101137	Not Available	563

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334899_1004096	Ga0334899_100409625	F066219	MKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSKVFDWNSKRLLTISPIGE
Ga0334899_1008344	Ga0334899_10083448	F055545	SFKLSTLGGAKIKADVGASHAPNIAHQTDVGNLMSGGEH
Ga0334899_1009005	Ga0334899_10090052	F065263	MEAAIFGKLIISSLVMIIAGWLFQDQADRYSGKIARFFQRALTVLLMLSMIVCAGSVIAVIWINN
Ga0334899_1012705	Ga0334899_10127054	F022008	MTVSEIETLREALMDLSKQVQALSEDSRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334899_1018957	Ga0334899_10189574	F070092	LMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFTDMLKFLDGTNNAVYISETLKYKGG
Ga0334899_1019381	Ga0334899_10193811	F028538	LDLKRRIERCEEVRRQCIAQAQAEGVTKQGSFRLKFRTRKTRTVIPERFFARFGAETFVRCCTVAIGKAEALLGKAALDDCCEVEVKDLGATVEYVRPEGSE
Ga0334899_1020832	Ga0334899_10208325	F065263	MEAEFYGKLIISSLAVIIAGWLFQDQADRFVGRFAKFIQDSLTVILIIAGLVCTVSVIAVIWINN
Ga0334899_1027143	Ga0334899_10271434	F082560	MYAVFRCAGIPVDGGIGVTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIDADTWVVEAKVPNAKPRVPKSVRVGYPEEMQEWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYLSFKIGGEYYGRIGNA
Ga0334899_1028127	Ga0334899_10281272	F082560	MYAVFWRAGIPVDGGIGVTEKSIVKKIQEWFKSKGGVCHKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKSVRAGYPEEMQEWMEQGATVLQAKTLYDWQLAGAVALVATSVEDMERMFEKEYFGYKIGGKYYGRIGNA
Ga0334899_1034557	Ga0334899_10345572	F059653	LTNLEALQSQTEYSNDNLLEKILLDNGLTASATYAAGNSKDIDLCAASLYFTLAAHPEFRDGSTSIKYNAVQLIAMARAILQKYGLDEPTVDGA
Ga0334899_1048874	Ga0334899_10488741	F022008	MTVNEIEVLQEALTELSKQVKSLSDDNRASFGRIYDRLTKIETQMSERECQFKKFERALDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGG
Ga0334899_1049008	Ga0334899_10490083	F089495	MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKA
Ga0334899_1050505	Ga0334899_10505053	F059692	MDKETEQLILKKLQIDYLSLHAVLTDLEKIISALVVDLDPRVNEIQRIQDQIKGYLSEP
Ga0334899_1061462	Ga0334899_10614623	F065263	MQNQHCSKKMEAALYAKLIISSLVMIIAGWLFQDQADRYSGKIARFFQKALTIVVILAMIVCAGSVIAVIWINN
Ga0334899_1089144	Ga0334899_10891442	F082560	VTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKFVRAGYPEEMQKWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYFGYKIGGKYYGRIGNA
Ga0334899_1099714	Ga0334899_10997141	F093482	LYSGGLGRAFFVLRRFLMEERTLDSLWEKIEKENPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334899_1101137	Ga0334899_11011371	F089495	ITGYADVPELPEPVVDAPAEGYSPQGVFNSIEEGDDTITLPEFSITLDINDADVASGKYALDQWFNNHKESSGATALVSTNDGSAYLKKAIDGTTVSANLATDWFTIGMKVIFDTGGTGKAFGKNYKYVRPISASFSTSNKAQVTLRAQIVGAPTDITSSS