3300032541: Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300032541
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085735 | Gp0095243 | Ga0352983
• Sample Name: Metatranscriptome of cow rumen rumen associated fungal communities from Illinois, USA - Cow X-3 switchgrass (Eukaryote Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53939285
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	4
Not Available	13

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Illinois
• Coordinates
  • Lat. (^o): 40.102108
  • Long. (^o): -88.227299
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006460	Metagenome / Metatranscriptome	372	N
F006970	Metagenome / Metatranscriptome	361	Y
F028678	Metagenome / Metatranscriptome	190	Y
F036516	Metagenome / Metatranscriptome	169	Y
F037523	Metagenome / Metatranscriptome	167	N
F037527	Metagenome / Metatranscriptome	167	Y
F049349	Metagenome / Metatranscriptome	146	Y
F063247	Metagenome / Metatranscriptome	129	Y
F078088	Metagenome / Metatranscriptome	116	Y
F094710	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0352983_1000155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	795
Ga0352983_1003627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	894
Ga0352983_1003876	Not Available	637
Ga0352983_1003969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	955
Ga0352983_1013193	Not Available	825
Ga0352983_1013847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.	1013
Ga0352983_1016034	Not Available	905
Ga0352983_1019095	Not Available	728
Ga0352983_1020603	Not Available	763
Ga0352983_1027880	Not Available	570
Ga0352983_1028536	Not Available	610
Ga0352983_1031039	Not Available	1065
Ga0352983_1034836	Not Available	962
Ga0352983_1035106	Not Available	636
Ga0352983_1035124	Not Available	687
Ga0352983_1041009	Not Available	746
Ga0352983_1081158	Not Available	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0352983_1000155	Ga0352983_10001551	F037523	ENLIVKYNAEKFAKLFKIFSNKTVNPPKRDLVDLMKAEYLYMNGLGASNCDLFKLLRRYWIRMVCSSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGVFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352983_1003627	Ga0352983_10036271	F037523	TKNKLSFKGKSAKRIKAPEDKSVTGMILPSLVRYLDEKFIGVKAWAMNNLINKWRAEKFAKMYKIFSNKITVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCERINKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKIDKKY
Ga0352983_1003876	Ga0352983_10038761	F006970	SDNPLLDKRIVKSTLKTHAYSTPWDQPIYQEKIVSNQKYSKIESVFEIPYLKDAPDYRSGDFFHRFDICVEKKKNLKKTLDDITKRYNDIMAIFNKDLDRIFAGSPSKEDKDRMKELIIKMMGIYHEFREIEHYDDIFKKEVEERKLTFEGDEKEKYEEGMAILSKGFPFQLTIAHQKMNDNFRRSINRFFLEKNMRFYKPAEIDDAKVYKE
Ga0352983_1003969	Ga0352983_10039691	F037523	RNHANYLFYKLLLTKRETGNRIESFESGPTPKKISFKGKSNKKVKVPEDRSVTGMILPSLVKYLDDKFKDTKAWAMENLINKWKAEKFAKVLKAFSNKSTQPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWIRMVCTSMYGPSRVYKTLYLIKMVMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKISKKYVFQPMQVLLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEK
Ga0352983_1006075	Ga0352983_10060751	F037523	EKFAKLVKTLSNKTIVPPKRDLVDLMKAEYLYMNGLGASNCELFKLLRRYWVRMVCTSMYGPSRVYKTLYLIKMIMMHKAIAYQRYIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGDKGEKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQVLLEREGPSQFFMSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKIEKKY
Ga0352983_1013193	Ga0352983_10131931	F094710	EVLCRITSVKSKFIYTLINNKLIGRMDIENYQGNVEKIQKLIKETVGIRKMSVESRGSTNSDVTNNYPKELLIKAEVIDIIKLQNKLNDSELGIKKKKIKKLKIYKIVPQIDFNSIDIDSDENIKINSGLTNEPVSSNLDITGKEPNIGIISSIKPLNKYPILLKIKANLEEKLQIPFNEIPLNMLSDDGEIKYKLGQKIKFLYDKKNNSCKIFNNNINDKEEIKPGKKYICRILKKLDGKGLIISIRKDIETFVDICEITDFLHYDPLDFYKI
Ga0352983_1013847	Ga0352983_10138471	F037523	MFGKIQNLQGEYKREHANYFFYKLLLTKRETGNREENLEVTPVQKKMVFRGKTNKKLKAPEDRNVLKMILPSLVRFLDDKFISHKSWALENLKDKWRAERFAKLYKTFTNKTILTPKRDLVDLMKAENLYMNGLGASNCDLFKLLRRYWIRMVCSSLYGPSRVYKTLYLIKMIMMHKAIAYQRFIRELIRKWRFSAFIQNISRRKLELLYKNLHVSYLQMANEMFGEKGDKNASVVKEFERLATRMGIFTNEDYNNPNEENFCEKINKKYVFQPMQILLEREGPSQFFCSGIEVEDSGENNEDYYVDQEIPGETIGKYKQETSKSNSRIEKRY
Ga0352983_1016034	Ga0352983_10160341	F094710	IYIACNLYDFCYKLSEYNLPELSVNSKIEIKLRKITKNNDEILIGEMPEILIKKLMENGEKLKSEYDSDYINIGDEVLCRITAVKSKYIYTLINNKLIGRMDIDNYQGNLEKIKKLLKETVGIRKMSVESRGSASSDVTNNYPKELLINADIIDIIKLQNKLNESDLGIKKKKIKKLKIYKIVPHIDFNEINFEDDENTKLNSGLTNEPLSLNLDITGKEVNIGIISEIKPLNKYPIILKVKNNTEENKLQIPFNEIPLNMLKDDGEIKYKLGQKIKFLYTKNKDNDIIQIYSANNNNKK
Ga0352983_1019095	Ga0352983_10190954	F049349	MEEYGCPYCWDMKKNKEKPILFFFDAANNYRECEYCPKCG
Ga0352983_1020603	Ga0352983_10206031	F028678	MQEKLLIKLICLAELDDLADFLWVTLLLDELNKLHDTVGNKLVTDGLVLGEHLAELVKKVDDLLLGVRILDVVLKSINDELADRAAGITVSGRAELDHLTNLLGLHGLDVLDDLLELTVKESRADVGVLGANIAAKLSDELLDLLVGLALIQPVVDELNDGLTGLTLDVISSHGASTNGGENKSDVDELHYDSVNYSQ
Ga0352983_1027880	Ga0352983_10278801	F036516	KVPNLINRIIKKIGVYDKKLEYEGRQLAFNVNLCKVELEDPNKINVSEIQIVEPIPPRIRNFLISGKQIKSISENGDVKEMQLLFSQDLMKVSLKKIKSNLPPKPKYIIDTPTIKKILKGHGTDAFKKSKGFFRSIPKPEVCFSIIGPTTVDGTKAFNIECENEKEVDKWIEYLKVVINYFKKTHTIKG
Ga0352983_1028536	Ga0352983_10285361	F006460	KRFRISQDGNEFAMAIKLLGERVKLECVDAGVPGAPIYCRTYTVDELASESRFFQMVPRSNEAQIELMNIVMSEKVRLYNRGDYMEVTFFLPNGEDLMLQLPRESLKMPMINPNLGQSIQQSVVYDPVTGTSRIQTSVVPTPGVKRSLYDEIRMRPGFGTPFVDSYGDEGFFETGLHSKLTNSTVVATPGGATPAANTSSGCP
Ga0352983_1031039	Ga0352983_10310391	F078088	STRIYCIIILKRLRSQRLEPRGKTRHQISLCDDGADEVVDTALVLATDKTDVTLLTPAVTPGVLDDPVLSASLNTITNKKDTVVHASRRARGVIDTAAVEAPVGGIKSNRERTVGVKSSDHAVLISIDEAPAGEVVLDVALVELASLINTDIRIIVLSNHTNADSIGESIGHETTIAARVANLLGSAREDHAILLAIDELLLRDKRKLLVGKEVGTLHATSGRESPAGTTVGLILDGSDSTLISPVLALRIITETINSKSVLARHLSDGHGTKVLGGELLLSKIGELVKSKAALALTVEVTDKSEVALESVVAGDVLLSAVVDLAVLDGPVNELIIDISGESTADENCNCNKDC
Ga0352983_1034836	Ga0352983_10348362	F049349	MDEYGCAYCWDAKKKKEKEQFYFFDAANNLRQCDYCPKCGRKYGEVPTDE
Ga0352983_1035106	Ga0352983_10351061	F094710	KSEFENESLNIGEEVLCRITSVKQKYIYTLINNKYIGRMDIENYQGNIDKIKKLLKENIGLRKMSVESKGSTGSNNVTNNYPKELLINGEIIDIIKLQNKLSANELGINKKKKIKKLKIYVIVPQIDMKNEIEIEEPNDILNSGLTNESVSSSLDSTGKEPNIGIISIIRPMNKYPIILKIKNYSENKLQIPFNEIPLNMVKDDGELKYKL
Ga0352983_1035124	Ga0352983_10351241	F028678	MVRTTAAGRKANRLAELDDLADLLRITLLLDKLDELHDAVGDKLVTDRLVLGEHLAELVKEVDDLLLGVRILDEVLKSINDELADSAATALLEFSGAELDVLTNLLGLHGLDQLDDLLELTVKESRADVGVLGANIAAELGDKLLDFLLGLTLIQPVVDELDDGLTGLALQVSHGASTDGGKNKSDVDELHF
Ga0352983_1041009	Ga0352983_10410091	F063247	EIDCDPWTGMGRQQNHYEHICKNIVGCEPQPRISASFGCWEWPITYQTKEQQEKTAEFLKDLYNKGLCRYASW
Ga0352983_1081158	Ga0352983_10811581	F037527	EMSCFFKNYMKILIKQNDMVKNHMKDFFKYINLEGKAYTELIDRREELKAKYNAENQRVTAKKEKVYATGDITKFELGTDEKNVDRERILHDKPYAFEHICQNDTANLHKIYNQLGYANKMNMRELKKMIKEYCIRYVDNVKAFDVEFYPSINDLIGTWSNMETFVMSANMPK