3300031685: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031685
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267070 | Ga0228549
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20584120
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	11
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006207	Metagenome / Metatranscriptome	378	Y
F007565	Metagenome / Metatranscriptome	348	Y
F010299	Metagenome / Metatranscriptome	305	Y
F028443	Metagenome / Metatranscriptome	191	Y
F039966	Metagenome / Metatranscriptome	162	N
F042124	Metagenome / Metatranscriptome	158	N
F044865	Metagenome / Metatranscriptome	153	Y
F053832	Metagenome / Metatranscriptome	140	Y
F061461	Metagenome / Metatranscriptome	131	Y
F063376	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F074330	Metagenome / Metatranscriptome	119	N
F079542	Metagenome / Metatranscriptome	115	N
F082271	Metagenome / Metatranscriptome	113	N
F086468	Metagenome / Metatranscriptome	110	N
F087102	Metagenome / Metatranscriptome	110	N
F088418	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228549_102180	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1402
Ga0228549_106771	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	821
Ga0228549_107332	All Organisms → cellular organisms → Eukaryota	788
Ga0228549_107543	All Organisms → cellular organisms → Eukaryota → Haptista	775
Ga0228549_107714	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	766
Ga0228549_108065	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	747
Ga0228549_109150	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	697
Ga0228549_109463	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	683
Ga0228549_109682	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	675
Ga0228549_110410	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	646
Ga0228549_110594	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	639
Ga0228549_110777	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	632
Ga0228549_111161	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	619
Ga0228549_111299	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	614
Ga0228549_111564	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	605
Ga0228549_114300	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228549_100616	Ga0228549_1006161	F007565	TLARALRRTMGTSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228549_102180	Ga0228549_1021801	F044865	ERSRSRFAPHHRAHDGERPMAAARAANSGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228549_105889	Ga0228549_1058891	F068493	RHMMNRGLSRGWKPWSEKAAERKVFLQKLRKGVSRMVNRKLALGWGAWSEMAAERSEFLRKLRQGLSRMVNRKVALGFDAWRAAVAPRDDHMSKALQHFLNRELSRGWVAWYTTWEVLRTKRESMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRKSLGHMLNRGLSRAFGAWSELAAERAEFLQKLRKGLSRMTNRKLALGFDGWRAAFAPRDDHMSKALRHMMNR
Ga0228549_106771	Ga0228549_1067711	F082271	RKVALGFAGWLAAIAHVRKQRERVEETARRAIKSMWLQSLQSATNTWVAISEARQRAQQALHSAASAFRGFGMRKAWNGWLGLLHDRQMMASAFYCWTHHLQRTGFASWLSSTVVSAMKQQLRQTLSCLSPTKRSMRKAIDSWSEYGYTMWALSRGAAALRLRKECVAFSTWHEHICIDGERQAAMWRAVASMIQSSLRASLNTWMSYAEEHVEASRVLADAMSSLQPEGHVVHIALNIWVGIMVQRRSMVVALAKLTKSEQMWGLHTWRAHA
Ga0228549_107332	Ga0228549_1073321	F063376	IMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228549_107543	Ga0228549_1075431	F006207	TFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENG
Ga0228549_107714	Ga0228549_1077141	F010299	TTSTINRFKGQLLKVMGRGGAVAEWQHEGLRRNAEKHFDAAIGQLMVDGVGDQTRVQLTTSFGKQLTELTAKFLESPPMQLQAIAAMRRKTGKAPKPPRGIRAGVGLVGALRNQFGGGQGNLQTYAGYVDGLNSVHVMYANDGAIADSSGAEPPPFRWQPKMNFDISI
Ga0228549_108065	Ga0228549_1080651	F042124	MSINGPAGGRPSRSPSRSDVAKAASLAEEPLIPPVVRVKNSAKAGRPFSNYQKHQAKTQALKGHTIHITSVGPYISRPEQRNLDDQGLRYRSIHKEAFKPAGLWDKYEPPLGGWGFAAAGFVLPDDLPETAKRFGSFYNTHLHQFRATAPKGNI
Ga0228549_109150	Ga0228549_1091501	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVSRLW
Ga0228549_109463	Ga0228549_1094631	F086468	AAQKMEIDLLGEPRLKNGLTYYPGVLTDDGSVILGNIVRLQLMAEGSQPYIGYGFLKGLWLWRDQPYMRVQYMAPTRMDLPRDAIAYRAAPDASGIPELMVTNRVGDLHLNALLGPVYIEGSPLMGQLFQENVGASADGFILMRHLDPAVQRVQPLDEAFRLTPIVQAFPKTVLRAMLVPLASSKAPELRVPKCGGSCSSSISSSSTAPVTPATPHAAPPAAALPST
Ga0228549_109682	Ga0228549_1096821	F087102	RPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRACSMTSHAAAPLVAGLVTGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVFHILRKTLEAVAELRTTSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRADPTLVLGQSLFVAVSRVAQVQEQENVHRLQSRSWPPLHSRVQTVFAEAEA
Ga0228549_110410	Ga0228549_1104101	F088418	MRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSQASTHRSAADIKVLRRCGNQAVKLAEAGLKQPTSSTSKVVSSATIQALDAHRAAEAQK
Ga0228549_110594	Ga0228549_1105941	F074330	SRNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINPP
Ga0228549_110777	Ga0228549_1107771	F053832	GPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVR
Ga0228549_111161	Ga0228549_1111611	F079542	LAPNGAPDNDRKAKESSWLVSQAFIEGLRYYPTGKAVLESNDSEATYSGNTHGKKAYNMEHMETDLRARLEIAPRFDNQEWRDDQLPREWVPDKSPSMKKHMARVRERLKR
Ga0228549_111299	Ga0228549_1112991	F061461	SVVCSTMPKGIPAPGPWDLPGDVSTLSNEGLAEGESIWVRLATIVRARRLDLRLLMNACDLHNRGMVPIKEFQKGLAYSLGNQWNELECTTAEFKELTDPYLSRVPKKPGDPDPFVKWQEFTTHVQALADQMGSGKAGDY
Ga0228549_111564	Ga0228549_1115641	F087102	FKADSRAAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPVDEVGALLDRYRWPHDAKRQQVMCILRKTLEAVAELRATSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHATRADPTLVLGQNLFVAVSRV
Ga0228549_114300	Ga0228549_1143001	F028443	KLQAWVRPLLRKERRIDNPNPQMTYRMWAELMDGPEPNANAFSRAKAACPKMVGEWFLTQESQITGDERTSKKNQMTFKASLSLAQARWNFLRSQAIEQIEGGEVDAEGGKDGQGQGTLDFSELNECICRCAVNMYEHLLDTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMW