3300031648: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_0mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031648
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267073 | Ga0228552
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_0mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24536991
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	8
Not Available	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005228	Metagenome / Metatranscriptome	407	Y
F007736	Metagenome / Metatranscriptome	345	Y
F025010	Metagenome / Metatranscriptome	203	Y
F026197	Metagenome / Metatranscriptome	198	Y
F030329	Metagenome / Metatranscriptome	185	Y
F039966	Metagenome / Metatranscriptome	162	N
F043734	Metagenome / Metatranscriptome	155	Y
F050807	Metatranscriptome	144	N
F082271	Metagenome / Metatranscriptome	113	N
F087102	Metagenome / Metatranscriptome	110	N
F089700	Metatranscriptome	108	N
F091182	Metagenome / Metatranscriptome	107	N
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228552_100127	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	4951
Ga0228552_102231	Not Available	1618
Ga0228552_103728	Not Available	1285
Ga0228552_104116	All Organisms → cellular organisms → Eukaryota	1217
Ga0228552_105950	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1012
Ga0228552_106139	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	997
Ga0228552_107606	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	889
Ga0228552_107952	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	866
Ga0228552_110406	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	738
Ga0228552_110464	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	735
Ga0228552_110876	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	716
Ga0228552_113224	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	628
Ga0228552_114149	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	599
Ga0228552_114944	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	577
Ga0228552_117879	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228552_100127	Ga0228552_1001271	F025010	GHCSFAEASAVLSERLDAATQPLEVEKIRGAMDTLKSASEAAVNTATGTFMFIWAKVSNVISKRTDFTFKLEAVGKSKATSHSATLVRPETEAEFYEMSHLFVMTIIALGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCTGCDYDAAKKLRAPAA
Ga0228552_102231	Ga0228552_1022311	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAE
Ga0228552_103728	Ga0228552_1037281	F050807	MELKATDFLTTARASNEVAITVRGNAKVKAKRILQLLPAILGKERCKAGWRPKGSQIAVACVKDGNCILSLYSRKQMPKPVEVHNLGPGTPTWLDWDCQGTSLAVMVEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLP
Ga0228552_104116	Ga0228552_1041161	F026197	LTLLCGAVAMPFPSWINETTLCANGQCNKPNSMYERIADIQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTHNCGGHDSEILSCNIDEAWKNLKIEYDAFDFNKEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228552_105950	Ga0228552_1059501	F005228	VSSAMADEGMAEAKKTIVASGYKQVGSRATPEAITKEIKKLPAASGMLDSRKRALHDLAHALAYVQENHKETVCNNCKTEQCVFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228552_106139	Ga0228552_1061391	F089700	RVAMPAKATAQKTMAGASVFDPTTAKCGLVDGGEADGVASSNEMLELMNNHALLMQSSTGGKSLLMGNNRDADGTVDRSPPPTPEVKKILKEVKRGILRYGIDMIMEFRTQGATQYGTITKSRFHSIITTTFGNQKNFFWDDEKLKILSTHYGTGATDMKLGGQRQVAWMDFCEDLGETDGSYQENAKYLEGYEGFNTLYADAVLADAVVDPMGLKPTDDNPYN
Ga0228552_107606	Ga0228552_1076061	F102393	FFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228552_107952	Ga0228552_1079521	F082271	VNCVSLRLQRAGFASWVSATEVSVTKQQLRSTLSSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQL
Ga0228552_110406	Ga0228552_1104061	F007736	ECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG
Ga0228552_110464	Ga0228552_1104641	F082271	RERVEETARRAIKSMWLQSLQSATNTWVAISEARQRAQQALHSAASAFRGFGMRKAWNGWLGLLHDRQMMASAFYCWTHHLQRTGFASWLSSTVVSAMKQQLRQTLSCLSPTKRSMRKAIDSWSEYGYTMWALSRGAAALRLRKECVAFSTWHEHICIDGERQAAMWRAVASMIQSSLRASLNTWMSYAEEHVEASRVLADAMSSLQPEGHVVHIALNIWVGIMVQRRSMVVALAKLTKSEQMW
Ga0228552_110876	Ga0228552_1108761	F091182	IGFPAMGRWNEVESVFYSWEPDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPRHTLQDGRNEITPA
Ga0228552_113224	Ga0228552_1132241	F087102	YDETIDAVFKADSRAAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPVDEVGALLDRYRWPHDAKRTQVMCILRKTLEAVAELRATSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHATRADPTLVLGQNLFVAVSRV
Ga0228552_114149	Ga0228552_1141491	F039966	SIVGPKLPAIKMTDGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPTIAAAELGVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQHALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEATVGSAGGAPALLQPQPSLSGMAVTDDAKEVALGMVDVGTL
Ga0228552_114944	Ga0228552_1149441	F043734	DAAGAYQHAHATPSQAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228552_117879	Ga0228552_1178791	F104431	AHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASC