3300031642: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031642
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267061 | Ga0228540
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9707276
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9
Not Available	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007463	Metagenome / Metatranscriptome	350	Y
F009790	Metagenome / Metatranscriptome	312	Y
F012945	Metagenome / Metatranscriptome	275	Y
F028443	Metagenome / Metatranscriptome	191	Y
F039966	Metagenome / Metatranscriptome	162	N
F044875	Metagenome / Metatranscriptome	153	Y
F055416	Metagenome / Metatranscriptome	138	N
F061477	Metagenome / Metatranscriptome	131	Y
F063286	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F087102	Metagenome / Metatranscriptome	110	N
F088418	Metagenome / Metatranscriptome	109	N
F091182	Metagenome / Metatranscriptome	107	N
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228540_101141	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1210
Ga0228540_101681	Not Available	1022
Ga0228540_102328	Not Available	883
Ga0228540_103141	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	763
Ga0228540_103145	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	762
Ga0228540_103847	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	686
Ga0228540_104337	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	645
Ga0228540_104441	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	636
Ga0228540_104565	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	625
Ga0228540_104755	Not Available	613
Ga0228540_105375	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	574
Ga0228540_105645	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	560
Ga0228540_106100	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	537
Ga0228540_106549	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	517
Ga0228540_106916	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	503
Ga0228540_107006	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228540_100573	Ga0228540_1005731	F009790	GQWRSTNHGYNSKDVVLGAGFAQYTPGLCDDEVYQTVISGSLGNSGGYKKAVVGDGSGRMFGQTADAQQGGYNGAEMDEAMNNDMTGVTEAGYADKIATGFDKVAGDYSTLPRWMQEIFIKLRVLAKSEGIDMERTFQDAGGSRFGTISKRLFISALCIGFQHYRFSPAELDAIADAYGCGSDDIFNGGKMLVAWRDFVNDVLSAEVVAKEYEYSATDTDETDAGYSDGIATGIDKIAGGFDDLPPMLQQLCKDLRRMAKIEGISLEFSLQQAGGTRFGTMPKRHFCSALTIAFHHFKFTPEIYKALCDAYAVGPPDFAEGGKEEVAWRDFCNDVLSSGKDISAHGVQAIDLAAKYDPKKCLLQRLGARGPILERPRIEALQQVRTAAK
Ga0228540_101141	Ga0228540_1011411	F102393	VTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKKDKDKNFTGAKDMELVRH
Ga0228540_101427	Ga0228540_1014271	F068493	LLHRGLSRGWGAWLEMLEERAAFLQLLSKGVRFMLNRKLAFGFVSWAQAIDRTLRQAEGSGHLCRAFLYFKNRHLARGWTAWHAEWADSVAARTIMRKSLGHLLNRGLSRGFSAWLEMAIERAVFLQKLRKGLSRMVNRKLAFGFDRWITAFAPRDDPMSKALLYLLNRGLSRGWVAWYTTWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSMVEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQHLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAW
Ga0228540_101681	Ga0228540_1016811	F007463	HDFVIEAGLITDMYSIDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228540_102275	Ga0228540_1022751	F063286	NASNTAEAFEQRQREKRNSQVQSELEDAAFTKNVNKPISPKKGAFPDVFLDKSGEMDLATMNKGKNAKPDNRLQLTEFLGCLVRISFLRANPKHGQYDNKAKLVELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAGEGGGLGEGAFVGDCTVSRESDITGDERCKEKFTCRLSTLEAKFAFLNSQSLEQMTAGDSSDTDLMATLDFDEFIECLARCARDKYGEIKLM
Ga0228540_102328	Ga0228540_1023281	F061477	KPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQY
Ga0228540_103141	Ga0228540_1031411	F028443	LVRTAFWRANPQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQK
Ga0228540_103145	Ga0228540_1031451	F012945	TMSGNSLMFTDSVICFKELIDKEETAKRQWRGKYGMNKEGWRPVEPFERTGASNCKAELPSGMPSAALRNPYLYRDTVGEDGLAGGAPTRFGGRWDVLNKDKPIDYSLQTGQRVVKKGPHDCYCEIGYNCWSMAGKARTANFGMMGVFEREFYTNTPGELALVWDFKSEEEKVAHAAKIAAMQKQARGEN
Ga0228540_103847	Ga0228540_1038471	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHQQRTTRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCMLACVVQGISCA
Ga0228540_104337	Ga0228540_1043371	F028443	CILPNARRDTSGEFKKVLQADAATQGVLTEYRDRLQAWLRPILRKERSTLNPNPKITYKRWVELMDGPDADTQGARGAKPPCPKMVGEWYLSQESQITGDERTAKKNQMTFKAKLSIPQCRWNFLRSQSVEQVEGGEVDADSSDIATLDFSELLECICRCAVNMYEHMLTTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMWEATVIKADR
Ga0228540_104441	Ga0228540_1044411	F087102	AAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRACSMASHAAAPLVAGLVTGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVLHILRKTLEAVAELRTSSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRADPTLVLGQSLFVAVSRVAQAQEQENVHRL
Ga0228540_104565	Ga0228540_1045651	F087102	AAGLAKLRPYLDANMSKESAAAFQECCGKLFVLSRVHASMAPEVSFAKVQEITDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHAKRADPTLVLGQNLFVAVSRVAQAQEQENVHRL
Ga0228540_104755	Ga0228540_1047551	F044875	STQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIP
Ga0228540_105375	Ga0228540_1053751	F074330	RNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIV
Ga0228540_105645	Ga0228540_1056451	F088418	MRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPALNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGA
Ga0228540_106100	Ga0228540_1061001	F039966	VAIMSDGTERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEV
Ga0228540_106549	Ga0228540_1065491	F095000	AADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228540_106916	Ga0228540_1069161	F091182	PDEAGRLHWNVLRNRMTGGRLVRVQQAKHTTVSYYKQASRAGEGFGNRSSSRFNSGTVDRVGPGKYSPALATHGALATSSGHSGKLKSTAPRFLKKPQSDAPGPGKYTPRHTLQDGRNEITPA
Ga0228540_107006	Ga0228540_1070061	F055416	AAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI