Sample 3300031635

Basic Information
IMG/M Taxon OID	3300031635 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128948 \| Gp0324305 \| Ga0310115
Sample Name	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	46125303
Sequencing Scaffolds	32
Novel Protein Genes	34
Associated Families	32

Dataset Contents

Total Genome Size

46125303

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	1
Not Available	27
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis

Ecosystem Assignment (GOLD)
Name	Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Ecosystem Assignment (GOLD)

Name

Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Norway: Oslo

Coordinates

Lat. (^o)

59.9979

Long. (^o)

10.7895

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000364	Metagenome / Metatranscriptome	1229	Y
F000817	Metagenome / Metatranscriptome	879	Y
F003050	Metagenome / Metatranscriptome	510	Y
F003269	Metagenome / Metatranscriptome	496	Y
F003497	Metagenome / Metatranscriptome	483	Y
F006591	Metagenome / Metatranscriptome	369	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007847	Metagenome / Metatranscriptome	343	Y
F009017	Metagenome / Metatranscriptome	324	Y
F009335	Metagenome / Metatranscriptome	319	Y
F011079	Metagenome / Metatranscriptome	295	Y
F017080	Metagenome / Metatranscriptome	242	N
F017082	Metagenome / Metatranscriptome	242	Y
F018933	Metagenome / Metatranscriptome	232	N
F024939	Metagenome / Metatranscriptome	203	N
F028981	Metagenome / Metatranscriptome	189	Y
F030305	Metagenome / Metatranscriptome	185	N
F030619	Metagenome / Metatranscriptome	184	Y
F031504	Metagenome / Metatranscriptome	182	Y
F031875	Metagenome / Metatranscriptome	181	N
F039646	Metagenome / Metatranscriptome	163	N
F044924	Metagenome / Metatranscriptome	153	Y
F049453	Metagenome / Metatranscriptome	146	Y
F057922	Metagenome / Metatranscriptome	135	N
F060406	Metagenome / Metatranscriptome	133	N
F065397	Metagenome / Metatranscriptome	127	Y
F067447	Metagenome / Metatranscriptome	125	N
F068527	Metagenome / Metatranscriptome	124	N
F071456	Metagenome / Metatranscriptome	122	Y
F079408	Metagenome / Metatranscriptome	115	N
F086415	Metagenome / Metatranscriptome	110	N
F102319	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0310115_102332	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → Narnavirus → unclassified Narnavirus → Plasmopara viticola lesion associated narnavirus 22	2186	Open in IMG/M
Ga0310115_103400	Not Available	1899	Open in IMG/M
Ga0310115_110621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1052	Open in IMG/M
Ga0310115_113226	Not Available	909	Open in IMG/M
Ga0310115_114496	Not Available	851	Open in IMG/M
Ga0310115_114520	Not Available	850	Open in IMG/M
Ga0310115_114958	Not Available	833	Open in IMG/M
Ga0310115_115030	Not Available	830	Open in IMG/M
Ga0310115_115179	Not Available	824	Open in IMG/M
Ga0310115_115255	Not Available	821	Open in IMG/M
Ga0310115_115332	Not Available	818	Open in IMG/M
Ga0310115_115399	Not Available	816	Open in IMG/M
Ga0310115_115783	Not Available	802	Open in IMG/M
Ga0310115_116986	Not Available	762	Open in IMG/M
Ga0310115_117879	Not Available	733	Open in IMG/M
Ga0310115_118023	Not Available	728	Open in IMG/M
Ga0310115_119013	Not Available	700	Open in IMG/M
Ga0310115_119839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	678	Open in IMG/M
Ga0310115_121114	Not Available	648	Open in IMG/M
Ga0310115_121179	Not Available	647	Open in IMG/M
Ga0310115_121180	Not Available	646	Open in IMG/M
Ga0310115_122956	Not Available	611	Open in IMG/M
Ga0310115_123175	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	606	Open in IMG/M
Ga0310115_124222	Not Available	588	Open in IMG/M
Ga0310115_124315	Not Available	587	Open in IMG/M
Ga0310115_124655	Not Available	581	Open in IMG/M
Ga0310115_125219	Not Available	572	Open in IMG/M
Ga0310115_126159	Not Available	558	Open in IMG/M
Ga0310115_127999	Not Available	533	Open in IMG/M
Ga0310115_128646	Not Available	525	Open in IMG/M
Ga0310115_128756	Not Available	523	Open in IMG/M
Ga0310115_130490	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310115_102332	Ga0310115_1023321	F030619	MSPLQQVWTACWSGLVLSGWDSMRVAWFLHRWACRSAPRGVAYQVDCVKKLCHNVRGASLHSKRWKIQPCGIREDVVSCLCRLAVREPENGFAFSRLSRSLPEPPAREAVRHLQSAAEMASAPFPTSAAALESLRSFVSLSKRARRNPRAPRRLPSSSSSCLEWPATRGGIDGYLEHLGHGLEERGATQAEFSRFAGDSLGAFCLQRARVVLRPCTGVSEDMRESYRCAGLLALRAEGKPFAMKATALRTPGYKVRVVGVPDARTFVEGSWIRESSRLLPPGHWTISSESREIPGGLHYRRGHTFRSLDLSKATDGLSHAAVEVIIEALVRRGAIRPADHLMARRSLGLVGNTTWSFPDPIGEVVFSRGSPMGTPLSFIVLSWVSAWAVGKFSRSLTHGDDAVGRHRIGSDALDTYASRVASVGALLNKGKTFRADHSWTACEILALPRGNCEDRMTLFIPPSIPPPGLRAPVEADPRLENLWLRRMERVIKSRFPWIKCDPRLHIPVEAGGLGYTGRGLAVGRALRSRLGALVSRGPNAEVGAALIGKKPFREVGLFPRPLVRVPKPRAYWKAAKAVDQELAPLGADLVSVPLESFESFKCQLVENELRLSEGEKFRRKRVAGRPDSNKRSAVFRRLSVKPAKPLTRFGGLASLKRWALACKNVRVTVDQDIASEIRERIPDPSQPTQG
Ga0310115_103400	Ga0310115_1034001	F086415	VNVRAGGVIGDAFHRARTFAPQRSLERPAQEFPGFAAWPPRFRFSTPFHPRETLRSSRRPGPRPRAPLPTGVTLLWTSAPLADFCNLKQRAGTPNERSTLAREWGFRPATRRHQPMPVASARDTLPHRGPASLELHAPACARRVPLAWTGQNEGRVVRAKASRALLDDVARALLVTTRAPGSPARSATRPGGPRHSSCRPRLLFDASPRRATPSKEPGCLLPRRNPYATGGWLPRARLDRGFVTPPPQRHCSETRAPFWPALRRLLLTRKAPEPARPTVPRRPK
Ga0310115_110621	Ga0310115_1106212	F000364	EVMDMRRYLLVLDMDLLAMDEEHNLEPISYLVAKQEQEPCEVVVLSLADTGQTKLPAVELLLGAGSGKFPVAPQPDHDIDAAAEHRMNLAVRHLRTIGCRASGLISDEVLVKAVRTETASHDYDEVILATGRQDTPRLAQLTGRDPVQQLRRKWGQRLTVFHESL
Ga0310115_113226	Ga0310115_1132261	F030305	PGVFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEASSCPDSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFRIACRAGLQSVSLQ
Ga0310115_114496	Ga0310115_1144961	F031504	MPRASFIRRWELTTRGRDYQLIPTFPRLPGIIPEDPAGGPPLARQPLRRPSV
Ga0310115_114496	Ga0310115_1144962	F006591	GWVLATHSFPFAGPWALTPSQVGGRLLDASSRGNAELSVSWQDRRPDCSRRLLGEAFQHGSPIPCRGSAPHMVVRLLRHSLVTAVLQVGPRELPPERWPEGTGLASYPSIDI
Ga0310115_114520	Ga0310115_1145201	F006591	PGVGARHTLFPIRRSLGAPPLQVGGRLLDASPRGNAELSVSWQDRRPDCSKRLLGEAFQRGSHGPCRGSAPHKVMRPLRHGLVTAVRQVGPRELPPERWPDGTGLASYPSSDI
Ga0310115_114958	Ga0310115_1149581	F060406	APGVSMLGELNSTTGCRVLRLPQRPTSRFRLRSRPLAALARNLRLASPAPHSNSTGGRLRRLGSTFCRSARTVANLRLSPALRASVRPLADLPTFVGVLPQARPRTNFRFAPDFDPSTRLVSNFRFAPVVVATSACAFCCCGLWLAPVPPVCQTGGEPPTRIGCPSSGFTGFDSLGLRLVLLPPAGLLMHP
Ga0310115_115030	Ga0310115_1150301	F007311	VPSCWPPHFAVAPVMNYSMLDAWLPPLHANCSALHILRPVPVTDLTRCSTLSARCLPRIAPRSILCARAGRGSLRATDCSVVQHLELCTACGLLRTRYLAFRVVLGLLLARRFPLCVARGLLRARRLALDAGLRITPYADILRPYAVYGLLHIRH
Ga0310115_115179	Ga0310115_1151791	F068527	WRLNLDDQVVQPAVASLGYPSGEPAAFAAAPSSGCADALLSACAYSPAPRLDRRPTSPARIGVVSPGSTGGKHPIFTVCYALPADWLPTFQLALVSSLQLGLRLLPTHIWRRPSARLARTTSGFRRLLLQLPACAFCRCNLQACARLLPPFAKPVVILRLASAVSPSGFTGFDSLGLAPWRFIPPAGPSIRP
Ga0310115_115255	Ga0310115_1152551	F039646	HSHGELNRGEQEYWVSESGIVTQKNVDTGEPYSHPSVEGLFHQFTAKTKHGGVAWTVTKMGGDTYQFEFVSCKPEMCKEYVPLRFLKPETRVEWAFNDTVVRGFLGWTWMTLTQGDRKYQLVDCDLTDKLRRYIAGKPRNARMKSELMNYARRLTNKADIIAIHGGGAHEVLVGRMSDYVENAFYCDVRHELEVAMSYWRRNHVVTEALTTYYETGKMPLDVAKIQKAIKVGVKTLTSAAHIPALALGAGALATGGIGPAVLASSMAVTSLMA
Ga0310115_115332	Ga0310115_1153321	F017080	LDESVVQPVLRPLATPEAGLQLSLATSSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRCSVLRLDRWQAPGFRRLHCASARPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNHRLSPAVVAAFSLRLLPLRLSSLRWLSPVSHTGGELPTRIGCYAIQLYRFRLTRLASNASTSGWAFGAPLVSIGPCIAG
Ga0310115_115399	Ga0310115_1153991	F018933	HVPSCWSQPSLLRRSRITPRSTLDSLYRPRIAPRSVLIDRCCPPIARRSTLNARRRSQIAPRSTLCARAGHGLLHVQHLESSPRVQIAPYSTLCAPRRSQIAPRSTLPARYRSRIAPLSAIDAPCRSTDISVRLHFAPCAVHGLLRAQHFKLRTAHRLLCVRRLHFVPIVDCSAFLTPCLVSLADCSVLNT
Ga0310115_115783	Ga0310115_1157831	F024939	DYSSLDTWLSSLPADCSAFHFVHPMLLADLTRLSTLDARCRLRIAPFPAICVRAVQRITPCSTLRALHRSRIAPLSMLVRRASCGLLRSLRFAPRRHPRIDPPGLLRSDSSSFGNLMLRDGLRIAPYADTSHPRVDHGFLRVRHFKLRTVHRLLCARRLALVSDCGLLRSPHLAPWCCPRIAPCTTLGVLRLTRLAPLSTLITPHRI
Ga0310115_116986	Ga0310115_1169861	F049453	MRPVTPLAVENGVGKLAANMAPNASPGKRVWRTPIP
Ga0310115_117879	Ga0310115_1178791	F003269	VKTRIRIHRRVLTWFVSRWRNHQFKQAEKPHSKFSARKTLDGPATRPKTPLAVENSV
Ga0310115_117879	Ga0310115_1178792	F000817	AAVNRLKPEVSRIIPGDWGKAESGWLARPLSSRIARFGSGGRIHQFL
Ga0310115_118023	Ga0310115_1180231	F031875	VLMRSSNLTPFGDCDSSVLETCPDYLTQLAAVSNRDSLHDPSFAFDGVRTPPEESVNSASPNLRPVQRSRGNQPAPAFPRSPGIILKRSFLILLSTTVS
Ga0310115_119013	Ga0310115_1190131	F009335	MAKTRIRNYKRVFTWFASRRPQSPAEASLEASLEIQRPQGAGRPCYEAE
Ga0310115_119839	Ga0310115_1198391	F071456	QTAAERITQMTDEKPSAALGQLGEESSLVRCREMARTERGWERCHRDEHAADTRHHVRDRSWSTAAGAPLLQLGQPCTSACRWPDLVQPYRGSARARHW
Ga0310115_121114	Ga0310115_1211141	F011079	LREKRRDPWLWANASSKAMADPKPVVKTREMNRRRVLTWFASRWRNHQPKRAEKPHSKSARRKMPDGPATRPETPLAVENGVGNPAAPVRV
Ga0310115_121179	Ga0310115_1211791	F067447	RNYFLLDTYTKRYTRIAPWLTLSACVGRGLLRAQHFSAPPRSRIAPCSTLGFQRLTRIAPCPALPALMLHPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVFDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDTWPSVQRPDASVLSTSRPALPADCSALTALRCARYGLLHAWHLALAPVKDYSSLDT
Ga0310115_121180	Ga0310115_1211802	F007847	LKRAEKPHSKFSDRKALDGPATRPETPLAVENGVGKLTAPEKG
Ga0310115_122956	Ga0310115_1229561	F102319	MTHTMIPGPITSWSKSLLRYKSKPKVMDVVVAEKTSLMKEKKDGPSRAMLRSILLSVLHV
Ga0310115_123175	Ga0310115_1231751	F065397	VQVRVFVSRLYSPHKLTLVMAILMTKATTDMRWTEIAPPRRVFMGRWRPLEKTLRPIAEERNLSNGELMDGLRPTFPAVSGFKAEDDNERFASAEC
Ga0310115_124222	Ga0310115_1242221	F079408	MPVRPFGSAAGIGLPQSPPLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPNPPVFRSLPATILFLEEGYGSSFTVRYVSGGLLFLK
Ga0310115_124315	Ga0310115_1243151	F057922	VPSDPSNSPFSDWHAQSELSMQCSGDAVLLLPVAAFARPRISAPGPICLLYLLEARVSRQAFARPQRLLPFESHRSEVSAPALSLRRSSELFFQPVRPWTPILGCVFTPPGYVRRPKPVAVFQAQSSQTSIQLPLPFRTFILPDRSAQSAAWSEKLAFVSGPFSLRSPQALINFC
Ga0310115_124655	Ga0310115_1246551	F003497	LNSPLPDRHARPKHGSQRIGDIALLLPVTAFIRLRISAPELIRHFYLLEAFVSERPFARPQRMFSFENHRSEVKAPGLSLRQNSELFFQPVRPSAPTLDGVHRTPGDVRRTRPVAVSRAQNSQTSIQLSLPVGTFIPSDRSAQSAAGSEKLTLVRGPFFLRSPKASITF
Ga0310115_125219	Ga0310115_1252191	F009017	PISSLAHHGHATVLSIAFRSAVRIVCLLPGSRFGGYRFNAFRRAAAIFPKLNRSLVTAFPSPATAPAFTDSIPGSKVPACYFAVSLAGFDARSAIRLHCRNWFAPIPAASTLQARCISARKLIRPLSLSPLPSGSFSSLRIKAFNKRCCRPVRLPNLPDLRSLPAAGSITRLSCGSSSAVRYVSGGLLFL
Ga0310115_126159	Ga0310115_1261591	F017082	INKKDTVAKDDALYSCDETVNGGSKLVQVGCVKDGKQYKAGDSFEVGKQWFNCTRTGREKVVAKAAGCVNNGKHLNDGDRFNENDVNYECTVDGDKVDVRATGCVQNDGGSVVERRLGCTWVEGTAPFQYEWTCKRDEAANSAKKVQVRCNYNVGGGVYNIEPGCYRTVDKAAFGCVLQGDKLNL
Ga0310115_127999	Ga0310115_1279991	F003050	METAKAGAVAGEGKAVTSERSSFGKISCGAPESVEAVTAKPVAGEQTGRAHGASKRNA
Ga0310115_128646	Ga0310115_1286461	F044924	MRAPEIGADNGPKVMNSPGIGFETEPSGGAFGRTGSQRNTGVEAKGQGRSVDLVMVAKASLRASERPFRVSGSGRMQLLTPRLLH
Ga0310115_128756	Ga0310115_1287561	F028981	KMQLLKYIFLISLLFALSLCQTTPCYNSGNCFGATSTRCDITKVQLDAGTTGQCTAGFTEGQKCVDNDDCNAADNLICTKGNCVYGTPRGFKCSDNFFCNSQLYSRCANGTCVEGGATGASCQVNTDCSQISSSKWCLGSTCRVQSNFPCDNTNQCYGNNWICKQVGNEAIKA
Ga0310115_130490	Ga0310115_1304901	F065397	MAILKTTATTDMRWMEIAPRRREFMGRRRPVEKTLRPIAEERSLSNGELMDGLRPTFPAVSGFNAEGDNERFASAEC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031635: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRA1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences