3300031632: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031632
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128948 | Gp0324292 | Ga0310102
• Sample Name: Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRI2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12858505
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9982
  • Long. (^o): 10.7894
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003383	Metagenome / Metatranscriptome	490	Y
F003427	Metagenome / Metatranscriptome	487	Y
F007739	Metagenome / Metatranscriptome	345	Y
F009688	Metagenome / Metatranscriptome	314	Y
F017080	Metagenome / Metatranscriptome	242	N
F025423	Metagenome / Metatranscriptome	201	Y
F028056	Metagenome / Metatranscriptome	192	Y
F031389	Metagenome / Metatranscriptome	182	Y
F031875	Metagenome / Metatranscriptome	181	N
F040634	Metagenome / Metatranscriptome	161	N
F058585	Metagenome / Metatranscriptome	134	N
F062325	Metagenome / Metatranscriptome	130	Y
F068321	Metagenome / Metatranscriptome	124	N
F068474	Metagenome / Metatranscriptome	124	Y
F071421	Metagenome / Metatranscriptome	122	N
F079408	Metagenome / Metatranscriptome	115	N
F098181	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310102_103967	Not Available	855
Ga0310102_104020	Not Available	847
Ga0310102_104095	Not Available	839
Ga0310102_104434	Not Available	801
Ga0310102_105264	Not Available	726
Ga0310102_106279	Not Available	652
Ga0310102_106852	Not Available	616
Ga0310102_107268	Not Available	592
Ga0310102_107489	Not Available	581
Ga0310102_107515	Not Available	580
Ga0310102_107539	Not Available	579
Ga0310102_107877	Not Available	563
Ga0310102_107990	Not Available	558
Ga0310102_108889	Not Available	519
Ga0310102_108913	Not Available	518
Ga0310102_109176	Not Available	508

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310102_103967	Ga0310102_1039671	F058585	HSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGPCTPARPVANLPARIGFVSFGSTGCKPSTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPRGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFALAASPSALTGCEPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPLALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP
Ga0310102_104020	Ga0310102_1040201	F098181	CPELLVPRALRSRRSGIAPCSTLGFACFPRIAPCSAFSARRRSPILLGVQRLAPCASCGLLRTQRLAPVLVTDHSVPRIAPCSALETLPRIWIAPYTTLSLHASLLDYSTLAAFCSASPHGSLRKLRLALCAGLRITPYANTCCPCSVRGLLRVPL
Ga0310102_104095	Ga0310102_1040951	F003383	APFLLSQRPNPRVAPRFRAFGCAGDGSLELPRASMPLALPVSASFPSCPGAPAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLLRLPRASNPPAPIDGYPSYLGSRTIRFALVGSPSCPGHLSLGYGNRPISRLP
Ga0310102_104434	Ga0310102_1044341	F003427	MVKTRIRSHKRVFTWFASRRPQTPAEASLEASLKIQRPQGAGRPCYEAETTPLAVENGVGKLAAKVRQMPARERECGELP
Ga0310102_105264	Ga0310102_1052641	F009688	STASGVFGLVAGPSNALRPWILSEAFQLASAGGCATGLPTRSRHACNFFVRVLTTGSGSATAFDGAFARNHGSRLFTLKLLLFHSPAVSFLISPALGSFSRGLPGRRLLPDTNALFVRLSAFFIWRLQLFIFEPPESPAPC
Ga0310102_106279	Ga0310102_1062791	F031875	MRSSNLSPFGDCDSSVLETCPDYFTQLAAVSNRDSLPDSSFAFDDVRPPPEEPVNSASPNLRSVQRSRGNQPAPAFPRSPGIILK
Ga0310102_106852	Ga0310102_1068521	F031389	LTRPRRQIARSAVAVGERKAASRRELLPEMEKADAHRSIDPWPAKTGGGEQRAHVTPSSDAKFRPCMPVGERVGR
Ga0310102_107268	Ga0310102_1072681	F071421	STEAAQQAIQLPPLSFPRDGPPQFHSGLTATMICDMRLSGGGNLSPITPKSGYRFGPTSRNLAKVVAIGQPPTDPIAACWENQQDFS
Ga0310102_107489	Ga0310102_1074891	F040634	MHGTEHRISDCRAYSPQAPRLLAYPASASSPLDAPQLIFPKRDRSLAAAFPSPRTPSACADSTLRSMVLACYFAHSLAVRPARSAFWLRRQGLVGPNLRLHPRLKPVAFCTGPLCQLCRQVPLPFRSFSSLRIKALHGFATVRSAFRNCPIFVRSPQPFLLKFGCGS
Ga0310102_107515	Ga0310102_1075151	F079408	MPVRPFGSAAGIGLPQSPQLPRFRPVAFPAGELIRLLSPSPLPSGNFCSLGIKAFNGRRRRPVRLPSSPDFRLLPATVLFLEEGYGSSFAVRYVFGGLLF
Ga0310102_107515	Ga0310102_1075152	F062325	PSDPISSLAHHGHATVLSIAFRIAVRFACLLPGDRFGGHRFKAFKRAAVSYPKRDRSLVTAFPSPATASAFADSIPGSMVPACYFAVSFTG
Ga0310102_107539	Ga0310102_1075391	F068474	IFFRVSTISTGSAAVFDSAFARRHGSRLFTLKLLFFHSPAVSFLTSPTLGSFSRGLPSLRGLPGPDSRFVPPFGVFLSAGPTFYF
Ga0310102_107877	Ga0310102_1078771	F025423	PSLAHHGHATVLSIAFRSAVRLACLLPGNRFGGYRFKAFRRAAAYHSETEPFARNGLSLARNGSRFRGLHSGVKGPSLLLRCLACRLQCPFGHSAPLPELVCPNSCRFHASGPLHFCPQTHPAALPVSTPLRDFSLPRDQSVQRALLPSGSPSESARSPLAPRSCFYY
Ga0310102_107990	Ga0310102_1079901	F017080	RFNLDESVVQPVLRPLATPEAGLQLSLATSSSGCAGFEPPTCVGCSTSGSTGGQPSGSDRRSVLRLDRWQAPGFRRLHCASARPVANLPTCVGVLPPARPATNCRLTSGADPSARLVPNHRLSPAVVAAFSLRLLPLRLSSLRWLSPVCHTGGELPTRIGCYAIQLYRFRLTRLASNASTSGWAF
Ga0310102_108889	Ga0310102_1088891	F068321	MLTSVSERLHSIHWFRTDSFGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRTPNGVAWRFPDWTAVGFAFPNPFLGSRSLWISVTRILATCWARFDHDRGSLSPRLVKPLAAILTRIASGVFFADDFRVALSLAADFRRARYPLLRTDLAWKVGLRIRSHFHFRRAL
Ga0310102_108913	Ga0310102_1089131	F028056	PGFTARLSEPPACSAFDPQPDTPDSTFAARRRRFSACAGSVQQTFPQRTCIRPEPETRNGLSLARNDAFATITRSTFLACPFESTYKLCADPFHRRLSARFGFEAETGRIHHLQPVINALLIHSCDATPSPLPFGLFLPSGSKRSTGFITGSSPYRTPDLPFTPRRAFFRLR
Ga0310102_109176	Ga0310102_1091761	F007739	TKRAAKNKIDVACFRIIPGDWGKAGSGWLTGLLSNRAERRGSGGRIHQFL