3300031619: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_16mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031619
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267069 | Ga0228548
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_16mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11566702
• Sequencing Scaffolds: 11
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008291	Metagenome / Metatranscriptome	335	Y
F022338	Metagenome / Metatranscriptome	214	Y
F028443	Metagenome / Metatranscriptome	191	Y
F028693	Metagenome / Metatranscriptome	190	Y
F035605	Metagenome / Metatranscriptome	171	Y
F047450	Metagenome / Metatranscriptome	149	Y
F048057	Metagenome / Metatranscriptome	148	N
F048713	Metagenome / Metatranscriptome	147	Y
F063743	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F079587	Metagenome / Metatranscriptome	115	N
F090855	Metagenome / Metatranscriptome	108	Y
F095000	Metagenome / Metatranscriptome	105	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228548_102392	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	953
Ga0228548_102965	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	859
Ga0228548_103701	Not Available	770
Ga0228548_104303	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	711
Ga0228548_105164	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	646
Ga0228548_106171	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	589
Ga0228548_106649	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	566
Ga0228548_106778	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	561
Ga0228548_107217	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	540
Ga0228548_107302	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	537
Ga0228548_107386	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228548_102199	Ga0228548_1021991	F079587	SIRSSSQSTMLSTLALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228548_102392	Ga0228548_1023921	F028693	TDSSCWALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
Ga0228548_102546	Ga0228548_1025461	F048713	APQMFEYDDIAHSGHMLMKVIDMVPPKLAPGKTPKKPKKAEWQLEYFILLRTKHVVHFQPNTGFVDPFEKRIRGKAIDLMQAQVTLNEEDVAVEIPAALKEGFVDDDLSDGFEIQTSRHKYILRPKESSSEAWVDRITEVMFDEMDETAPPDDATRDYNDFLVGYNGVTGASR
Ga0228548_102637	Ga0228548_1026371	F047450	CDCWQNIEIADLHYFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDERCRNIFKVSLSMPQAK
Ga0228548_102965	Ga0228548_1029651	F090855	DEYNAIKGRKVDKATAAIYAKQRELVCGDSIAKLNILQPDLNYAMIDKDGDGVIEADEIAAAGGMQGYVFEDAKSEFEVMMQQKSFGQPKPFGSDPIDSWYGKPDYTTTRKDVERTVQSKLAAAQQKHLSYKPPTATPEGMRRHNFQPAPTIAEAIGTVRQEKVAYGTVHRNAPFGVDEADFNMKYETSSLAGPGNWDQSMASRIARRRLIGSQARGGQKSPTATGSMVPY
Ga0228548_103701	Ga0228548_1037011	F035605	MIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIM
Ga0228548_104303	Ga0228548_1043031	F028443	LEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKMLPGFSPAQHKL
Ga0228548_104336	Ga0228548_1043361	F068493	ASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSMVEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQHLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLGHLLHRGLSRGWGAWMEMLEERAAFLLKLRKGLSRMVNRKLALGFDSWTRSLQGSTVMSKGFFHMMHRELSKGLRAWQLMIEELKAKRESM
Ga0228548_105164	Ga0228548_1051641	F048057	KKLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVRGAERVLGRMLPGDVA
Ga0228548_106171	Ga0228548_1061711	F095000	VRLARLLPAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228548_106612	Ga0228548_1066121	F068493	RKGLSRMVNRKLAIGFDRWIAAFAPRDDPMSKALLLFLNRGLSRGWVAWYTTWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLGHMLNRGLSRAFGAWSEMAAERAEFLQ
Ga0228548_106649	Ga0228548_1066491	F008291	PDLRSVQIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228548_106778	Ga0228548_1067781	F063743	TLKEHKKWLEVWQRLEISDIYYFPLWEKGVHDLLQKHFNELTLIFLAYCRSLLGSDTAEDAMEMEMSEFHDFVVECGLETKHVSFDLMTNMFIKANATNSAAVRDQHSEGRRSAETKMDHLVGKGDTLATGRTTKVVGKVKGTNDGKEAKKDAELVLYEFMNLLVRIAFQRANPTFGNFGDQKPVK
Ga0228548_107217	Ga0228548_1072171	F104431	MVPTQLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVGNLH
Ga0228548_107302	Ga0228548_1073021	F022338	LGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228548_107386	Ga0228548_1073861	F104622	ETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA