Sample 3300031584

Basic Information
IMG/M Taxon OID	3300031584 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267071 \| Ga0228550
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19253753
Sequencing Scaffolds	17
Novel Protein Genes	24
Associated Families	19

Dataset Contents

Total Genome Size

19253753

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F007922	Metagenome / Metatranscriptome	342	Y
F009117	Metagenome / Metatranscriptome	322	Y
F030342	Metagenome / Metatranscriptome	185	Y
F039966	Metagenome / Metatranscriptome	162	N
F042134	Metagenome / Metatranscriptome	158	Y
F044875	Metagenome / Metatranscriptome	153	Y
F047450	Metagenome / Metatranscriptome	149	Y
F048057	Metagenome / Metatranscriptome	148	N
F053778	Metagenome / Metatranscriptome	140	Y
F053832	Metagenome / Metatranscriptome	140	Y
F061461	Metagenome / Metatranscriptome	131	Y
F063376	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F069666	Metagenome / Metatranscriptome	123	Y
F074505	Metagenome / Metatranscriptome	119	N
F079587	Metagenome / Metatranscriptome	115	N
F093418	Metagenome / Metatranscriptome	106	Y
F098718	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228550_101504	Not Available	1654	Open in IMG/M
Ga0228550_102351	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1370	Open in IMG/M
Ga0228550_104053	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1053	Open in IMG/M
Ga0228550_104809	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	967	Open in IMG/M
Ga0228550_106472	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	822	Open in IMG/M
Ga0228550_107088	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	781	Open in IMG/M
Ga0228550_107099	All Organisms → cellular organisms → Eukaryota	780	Open in IMG/M
Ga0228550_108492	Not Available	701	Open in IMG/M
Ga0228550_108751	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	688	Open in IMG/M
Ga0228550_109401	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	659	Open in IMG/M
Ga0228550_109562	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	652	Open in IMG/M
Ga0228550_109894	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	638	Open in IMG/M
Ga0228550_110314	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	622	Open in IMG/M
Ga0228550_110776	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	604	Open in IMG/M
Ga0228550_111354	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta	584	Open in IMG/M
Ga0228550_112364	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	552	Open in IMG/M
Ga0228550_113633	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	518	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228550_101504	Ga0228550_1015041	F009117	QKVGINQWVSTLQALNVIGTFTCTQGSDIVGDDRVGTEFKCRLSVPQCKAAFVNSQKETGGAVDDTTLDFDELLECIARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228550_101946	Ga0228550_1019462	F079587	MIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKMLDAFDKFRAVAALARKDGQETPAQASNASETVNVTAQA
Ga0228550_102351	Ga0228550_1023511	F069666	MEAALDLVDVATLAELKGVTRSWWALAQRVLCSRLCRRDGQPVPTRLDEITDLDVEQLIEAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228550_102708	Ga0228550_1027081	F047450	LGEGAFVGDCTVSRESDITGDERCREKFTCRLSTLEAKFAFLNSQSLEQMSAGDATEDDAMATLDFEEFLECLCRCARDKYGEIKLMSLADGVRGVFQNILGEKTDEAVIRDATYIHAERFDWKLAKPLNGQSLAAHRKWIDCWQNISIADLHYFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVDMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDER
Ga0228550_104053	Ga0228550_1040531	F009117	FTCTQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGSVEDVSLDFDELLECIARCGVDKYRAVEQIKTGEKVAAMIANILGDLNEEQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSAGRPFLELSQWFDALAGKLLFSDVTIDGYVVRLTQPQARAAF
Ga0228550_104809	Ga0228550_1048091	F042134	RQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQ
Ga0228550_105675	Ga0228550_1056751	F068493	KRESMRKSLSHMLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQHLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLGHLLHRGLSRGWGAWMEMLEERAAFLLKLRKGLSRMVNRKLALGFDSWTRSLQGSTVMSKGFFHMMHRELSKGLRAWQLMIEELKAKRESMHK
Ga0228550_106017	Ga0228550_1060171	F053832	GPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKIN
Ga0228550_106472	Ga0228550_1064721	F039966	RLSPPQSIVGPKLPAIKMTDGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPTIAAAELAMLREMCEADSMPARLEQCSIPELFRLVEGASFLDAPGALNHAQRALATRLNGKRADELRELLGATDDFGSAENRVAALAEPAFSPEGQLSVAAAGSAAGPPALQPQLTLGYAGGAPALQPQPSLSGMAVTDDAKEVALGMVDVGTLAELKGVNRSWLALARRVLCSRLSRCEGQPAPTQLAEITDLNIKVLVDAGRPWEA
Ga0228550_107088	Ga0228550_1070882	F074505	VKILIRKRRISCVPFFLRGGTGRRCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQDAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPRPERTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALGAYSRVSYRARLVCITIVDTVGFRTAVCVIRRPFCILGSH
Ga0228550_107099	Ga0228550_1070991	F063376	QLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228550_108492	Ga0228550_1084921	F044875	AEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLS
Ga0228550_108751	Ga0228550_1087511	F007736	FTCTQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISF
Ga0228550_109401	Ga0228550_1094011	F069666	GQPVPTRLDEITDLDVEQLIEAGRPGDAALAGRMLPGLLRLHGYGYVVDVAAVRAADLQCGMDNWHQPDSLLHGALKDALNSCISGEGEPPLRLTIAAVACAGSGVVCGIPVQQLREDSVTELNLRVHAPAAMLVAYLIPATSVLKNCNLLKSGIDVELAKKLAKIGAEKGIMLSGMTRDQTEAGFSRQRLRTAHAILIASDLQFMPAMTALGLYNNKN
Ga0228550_109562	Ga0228550_1095621	F007922	IFRAYAASSLEGSATEMDMEEFHDFVIDCMLETNFGQAYTFENMKEQFSRADKSGKGLAGPQANAELVLYEFLNVITRISFWRINPECGELEMDHQDTILPVPQCLEKTLRECILPKAHRDDAGQFRGTVMQMPEVQASLAEGRPRLQAWYATIPLDDNQKVGITQWVSTLQALNVLGTFTCTQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKE
Ga0228550_109894	Ga0228550_1098941	F074505	ETPVVDGRCRPRQERIRTDGDAEAGAAKAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228550_110314	Ga0228550_1103141	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQHALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEATAGSAGGAPALQPQLTLWMAVTDDA
Ga0228550_110716	Ga0228550_1107161	F053778	KPKLKEWYDKKVLDDSDQKGMAVSDKIGFQEWLRVLDRQDIVGEWEVEQMSEITGDESTKGVVRCRLSIPTCKAAFMDSQSAEQLGVAQADATSEQSVLDFDEWLECLARIANAKYQSIKQMDPAAKVKAFLQNFFGEKSEEDCMREATYIRAVRYDISDSVPLKDESPEEHAAFLSEFKRLDLQGLYGFPLWEAEVHDLLH
Ga0228550_110776	Ga0228550_1107761	F061461	VCSTMPKGIPAPGPWDLPGDVSTLSNEGLAEGESIWVRLATIVRARRLDLRLLMNACDLHNRGMVPIKEFQKGLAYSLGNQWNELECTTAEFKELTDPYLSRVPKKPGDPDPFVKWQEFTTHVQALADQMGSGKAGDY
Ga0228550_111354	Ga0228550_1113541	F048057	AKMKKLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERI
Ga0228550_112024	Ga0228550_1120241	F093418	PLWEKDVHDLLQKHFQTLSLIFLAYCRSVLGSSSAADAIEMEMAEFKDFVDECKLETKFVNFDLMTNMFIKVNAVNSAQVRDAHHESRRTAGTKRDQRTTIDPGRTKGSNDGTEAVKDQELVLFEFIAVLVRIAFQRANPTFGNYGNKKAVVQLPGCLEAMLKDEVLPRARQDTSQVFRDTIMEELS
Ga0228550_112364	Ga0228550_1123641	F030342	KPLPGQTLAAHRKWLDCWQNIEIGDLHYFPLWEKGVFDCLQECFQDLTNIFAHYAKSIGGSTTAEDAVEMTMTEFKELVKDVGLETKDLKFDVMSNMFKKANATNSGDVRKQRMVEKGNADAQGEFAMNTGTQMALKKNIQQASPKRNAKLNKIRDDELDQELVLYEFVEVMIRIGFWRANPF
Ga0228550_113633	Ga0228550_1136331	F039966	AKMADPGAQRVRLRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLEMCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEV
Ga0228550_113769	Ga0228550_1137691	F098718	EIMGDERCRNIFKVSLSMPQAKFAFIDSQNPDQLGVGQQTADSASTTLEFDEFKECIARCALEKYAPIKQMSPAAQIINFVKNLLGTENTEECLNKATLIKAQRYQWKRYSQPLSDQTLKEHKKWLEVWQRLEISDIYYFPLVGLALNLRAYDFVSQELRAAEDPEFETFY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031584: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_32mM_2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences