3300031560: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_60m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031560
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0306348 | Ga0265605
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_6_6_60m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103795653
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F006508	Metagenome / Metatranscriptome	371	Y
F014684	Metagenome / Metatranscriptome	261	Y
F024682	Metagenome / Metatranscriptome	205	Y
F025653	Metagenome / Metatranscriptome	200	Y
F035608	Metagenome / Metatranscriptome	171	Y
F046170	Metagenome / Metatranscriptome	151	Y
F071959	Metagenome / Metatranscriptome	121	Y
F076133	Metagenome / Metatranscriptome	118	Y
F079305	Metagenome / Metatranscriptome	116	Y
F086602	Metagenome / Metatranscriptome	110	Y
F088317	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265605_1003598	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	2514
Ga0265605_1016423	Not Available	1147
Ga0265605_1019601	Not Available	1033
Ga0265605_1025741	Not Available	879
Ga0265605_1029644	Not Available	807
Ga0265605_1029926	Not Available	802
Ga0265605_1033210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	753
Ga0265605_1046594	Not Available	615
Ga0265605_1047370	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	609
Ga0265605_1048269	Not Available	602
Ga0265605_1056437	Not Available	549
Ga0265605_1065443	All Organisms → cellular organisms → Archaea	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265605_1003598	Ga0265605_10035982	F014684	MIGYALSGAGAGLVLDELIHGPFTLTPTNHEFWGIVIFIAGAVCISKKPHGKD
Ga0265605_1016423	Ga0265605_10164231	F079305	RFMMMVAAGAALATAAGFQVQGNMSEAWDKGSLRVRTGPEMAKLWFGLPAHSGITVVAKPDTGAAVTATLNMSATVDLRVPAEYAVTITRDSGDGQWTCRDAAGSPVLLGFGSSVDETRHARLTYVADEDEETWKFTWPREATFLVELFGKAGKVVEEQDLSDSDEFELVGGGSFTLEVVPTEGSGEFSAKKSE
Ga0265605_1019601	Ga0265605_10196012	F046170	MIRIQDFGEVAYGGAVTLTSWWDNRRIEEGKIGTKDILKKASFYTYLGVGLIATLMSVFGWMRRYEVWTEKVSTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTFAW
Ga0265605_1025741	Ga0265605_10257412	F035608	VAIEDTNRIIRDYLLTCGTLTPLLATVTSIYCPRLPENAALPAVSFFTRGGGSTPYIPGIPEPSVQFDCWANNPIDAREVYRALYDNLQGIQGKVVTVGPPTEIIWSAIEEVQGQDLVDVEIPNYFRTLAFFRFMIKAE
Ga0265605_1029644	Ga0265605_10296442	F000344	MRPIHPHAAESGVGKHTARNCESAQACAAGKERVANAH
Ga0265605_1029926	Ga0265605_10299261	F086602	QIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIARDEPLHPLTK
Ga0265605_1033210	Ga0265605_10332101	F088317	MAGPEDNVKYPERPKLTSADVNKAAPKTRRDHYKGVQAPPVPKLEKSQLMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGEAGYKAVDDAYASFADGEFRTAQARGMLKSAPKCSLQEIAAFICTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPKYCPYDVRQGDYRLCAATAGYERELVKMCNPRYRAYLSRTKAIGDDCCELTIDVD
Ga0265605_1046594	Ga0265605_10465941	F006508	VALANAPSKAVADQSQVVKTRRRNRRRVLTWFASRWRNHQPKRAEKPHSK
Ga0265605_1047370	Ga0265605_10473701	F076133	GKARLETASSRVRPTGSFDPCADAVTPEGFGCYCADQNAVTVPGGPTPPKGLARSTSEARKEIGTAGRERTWQSP
Ga0265605_1047370	Ga0265605_10473702	F000344	MRPKHPHAAESGVGKYTARESERVQACATGKERVTN
Ga0265605_1048269	Ga0265605_10482691	F071959	VMSNDMTFTDKKEYRTKALAAGLERCGTKSIGDINSDVPGLQAIPIANKSARVAAIKAYIETGAWPKTIDQRELAPLTDFVAAAAQDFWQTIALAAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVGGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELFAIQVLCQVIAGVTPVHIDNFLFE
Ga0265605_1056437	Ga0265605_10564371	F024682	EDELISKLKQEIGKTLPPMFSGMAENMLESNRDVIINWLKENKDLVKEVIES
Ga0265605_1065443	Ga0265605_10654432	F025653	IGMSDPIKYFETKLKAMSLGELQAYKKRLDERIQKMIMDTAPNEKIAPLILYQGILEHEIKKRTTS