3300031504: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R6 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031504
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132857 | Gp0330683 | Ga0314821
• Sample Name: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R6 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17656113
• Sequencing Scaffolds: 4
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → biofilm material
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7997
  • Long. (^o): -77.8629
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F013934	Metagenome / Metatranscriptome	267	Y
F017067	Metagenome / Metatranscriptome	243	Y
F053640	Metagenome / Metatranscriptome	141	Y
F068522	Metagenome / Metatranscriptome	124	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0314821_104083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	836
Ga0314821_104139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	831
Ga0314821_105650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708
Ga0314821_111415	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314821_102976	Ga0314821_1029761	F068522	MRVPRSARVPIQPRTIVRIGRRVALAALAVTMSVSFGLHSTAYAQDSESSGRTHSLGVNLDFPDDGLVDSEQLCVALFSGTSPDLQKPPLLSRCIDPGADAVTFEGLRPGDFSVLLPGPGSDVEGQRYEGQLVTTNIPDDEQLDAFGIDINVGLSPEFTGTTGSVQVSVFGCPAGTNAGADKDSWVNECKSLAGGVPMTLTGIGSINDAAFQKVTGVSGNASGMVEFTDLPAGAYEIGGVLPANVSDSPALFAESSIDGSLGAIEPSESLALRPTETVAVDVFLVLDDTPDSATTVGTTDLEI
Ga0314821_104083	Ga0314821_1040831	F001633	GANLWGWAFVTRSFPAAHAWTRSLFAGGVLPDATLRGMRMFRSHGGTVLTVAGRELSSEASAPGSDAPCRERRAGRGVDTPATFIFRVGTFYRGVGISLWLIVGPALRV
Ga0314821_104139	Ga0314821_1041391	F053640	LDRTVAAQRSEMVAESTTGIIPGDRGKAGGNWCRPPLMPAKAVMRHISPVPLAGVVSGQSTHELGTEPQGAIRNRVEWSQATQGVSTCASTQLPQRLRLLLRRPERHRVSRRDDPAKRPHSPHEWGAQGTYGGGERTDLGKVREPPHRGGVKHTSPSCKRQRSLRGKRSDP
Ga0314821_104139	Ga0314821_1041392	F001633	QLVGVGVRHTLFPGGTYLDALAFAGDVLPDATLHGMRMFRSHGGTVLTVAGRDLSSEASAPGSDAPCRERRAGRGADTPATFIFARRHPYHGDGTGLWPVVGPALRV
Ga0314821_105650	Ga0314821_1056502	F017067	MPFWLARKAAPHVWKRVPWAKVWVVTLWLLKKGRDRIERNLTQREQTEFWNLLKKSKGRPDNLTKRDRTRVKHLVGKAI
Ga0314821_111415	Ga0314821_1114151	F013934	DKANIERIHLLLKRHEQMIEEKKLNPEEFLRQNEPFQEAFGRMARSTIVPILEEIKDILVGKVESASIFHKRTAAGLRVKLDRWEDFERSLLFFGDASTQTVRVTHEGVGFGLLSQKLGLQNVTPELVEEEAMKFLRRLFGQEQLRRPAHTPETADRRRAPSSPFAV