3300031444: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031444
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267078 | Ga0228557
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27796903
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	6
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F024700	Metagenome / Metatranscriptome	204	Y
F024710	Metagenome / Metatranscriptome	204	Y
F026197	Metagenome / Metatranscriptome	198	Y
F039928	Metagenome / Metatranscriptome	162	N
F039952	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F044865	Metagenome / Metatranscriptome	153	Y
F048727	Metagenome / Metatranscriptome	147	Y
F061461	Metagenome / Metatranscriptome	131	Y
F069666	Metagenome / Metatranscriptome	123	Y
F074330	Metagenome / Metatranscriptome	119	N
F079542	Metagenome / Metatranscriptome	115	N
F090311	Metagenome / Metatranscriptome	108	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228557_103916	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1354
Ga0228557_104644	All Organisms → cellular organisms → Eukaryota	1247
Ga0228557_106732	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1036
Ga0228557_108414	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	921
Ga0228557_108943	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	889
Ga0228557_109506	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	858
Ga0228557_111278	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	777
Ga0228557_111327	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	775
Ga0228557_111766	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	757
Ga0228557_112458	Not Available	728
Ga0228557_115333	All Organisms → cellular organisms → Eukaryota	628
Ga0228557_115385	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	627
Ga0228557_115786	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	615
Ga0228557_115849	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	613

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228557_102301	Ga0228557_1023011	F024710	SFQARAVGPSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESYRNTWTKSPPEIVAAGLCDTSTYKACFTVPDLSKVDATRKMAGHVGSWH
Ga0228557_103916	Ga0228557_1039161	F044865	FSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228557_104644	Ga0228557_1046441	F026197	DKELDKGPTGLMMMLPVYLTLLCGAVAMPFPSWINETTLCANGQCNKPNSMYERIADIQPGYQWNDAGGYCGSWATQRAVLSKGAWISQQQVRDHTHNCGGHDSEILSCNIDEAWKNLKIEYDAFDFNKEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228557_106732	Ga0228557_1067321	F079542	MTPKSGGKSARKSGNQSSRSTMLTNRTSSPTGRYHPDPERRLELRKADLHANIDYLAPNGAPDNDRKAKESSWLVSQAFIEGLRYYPTGKAVLESNDSEATYSGNTHGKKAYNMEHMETDLRARLEIAPRFDNQEWRDDQLPREWVPDKSPSMKKHMARVRERLKR
Ga0228557_108414	Ga0228557_1084141	F039928	VSPTFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF
Ga0228557_108943	Ga0228557_1089431	F090311	ASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSMVVAVASLTNSEQLWGLRVWNAHAALVRKQRERVEETARRAIKSMSLQSLRAAMNTWVAFSHAQKRSHQRLLSAASSFRGDGMRKAWNGWLGLLHDREVMVSAVTSMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPSKRSVRKAINSWIEYVYTIRALSRGAAAMRLHEERVAFSTWHEHVWSEGERDAAMRRAVASMLQSSVRASLNTWMSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSM
Ga0228557_109506	Ga0228557_1095061	F007736	VGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG
Ga0228557_111278	Ga0228557_1112781	F074330	AGPSRNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLRTNAPRLELAAPCQRRPAPC
Ga0228557_111327	Ga0228557_1113271	F048727	LVPVASGHMSFAMAVRFNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG
Ga0228557_111766	Ga0228557_1117661	F069666	DVEQLIAAGRPGDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228557_112458	Ga0228557_1124581	F039952	LARKAEVADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGNPFT
Ga0228557_115333	Ga0228557_1153332	F024700	AGRRVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTQLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228557_115385	Ga0228557_1153851	F061461	GAPFQSVVCSTMPKGIPAPGPWDLPGDVSTLSNEGLAEGESIWVRLATIVRARRLDLRLLMNACDLHNRGMVPIKEFQKGLAYSLGNQWNELECTTAEFKELTDPYLSRVPKKPGDPDPFVKWQEFTTHVQALADQMGSGKAGDY
Ga0228557_115786	Ga0228557_1157861	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPTEDGVYPVPMIAAAELAVLREMCEADSMPARLEQCLISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGATDDFGSAEERVAALAEPAFSPEGQLSVATTGSAAGPPALLPQPSLSGMAVTYDAREVAL
Ga0228557_115849	Ga0228557_1158491	F104622	LKTFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA