3300031410: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_8mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031410
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267064 | Ga0228543
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_8mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19729203
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	11
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008934	Metagenome / Metatranscriptome	325	Y
F009117	Metagenome / Metatranscriptome	322	Y
F010978	Metagenome / Metatranscriptome	296	Y
F013853	Metagenome / Metatranscriptome	267	N
F022338	Metagenome / Metatranscriptome	214	Y
F030329	Metagenome / Metatranscriptome	185	Y
F039928	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F042124	Metagenome / Metatranscriptome	158	N
F043734	Metagenome / Metatranscriptome	155	Y
F063286	Metagenome / Metatranscriptome	129	Y
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F076132	Metagenome / Metatranscriptome	118	Y
F080844	Metagenome / Metatranscriptome	114	N
F087102	Metagenome / Metatranscriptome	110	N
F088418	Metagenome / Metatranscriptome	109	N
F095000	Metagenome / Metatranscriptome	105	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228543_101284	Not Available	1694
Ga0228543_102292	Not Available	1341
Ga0228543_102833	All Organisms → Viruses → Predicted Viral	1218
Ga0228543_104832	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	942
Ga0228543_105581	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	874
Ga0228543_105964	Not Available	843
Ga0228543_106346	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	818
Ga0228543_106353	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	818
Ga0228543_106442	All Organisms → cellular organisms → Eukaryota	811
Ga0228543_106784	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	791
Ga0228543_106813	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	789
Ga0228543_107551	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	748
Ga0228543_108189	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	713
Ga0228543_108369	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	705
Ga0228543_108798	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	685
Ga0228543_109900	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	638
Ga0228543_110600	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	613
Ga0228543_110941	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	601
Ga0228543_113579	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	525
Ga0228543_113990	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228543_101284	Ga0228543_1012841	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDDNQKVGINQW
Ga0228543_102292	Ga0228543_1022921	F009117	NEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228543_102350	Ga0228543_1023501	F063286	TVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIELEEFHDFVKDAKLETRMINFTTMSVIFAKANATNTMEAFEQRMRERRNATVVAEQEVTADKQAVNRPISPKKGAFPDAPIPLPKEEKGKTKREGVEAKKPAKPDNRLTLSEFLGCLVRISFMRANPKHGQYDNISKLVELPSCLRKMLEEVVIPNAKQDQSSLFREELLSNAEVQAAVEEYRERLVFYYNEVNQLTALKGKTDNKLSMETWMDVCRGYLHFSKTKGSKHMEKARTTGSGKEGGGLGEGAFVGDCTVSRESDITGDERCREKFTCRLSTLEAKFAFLNSQSLEQMSAGDATEDDAMATLDFEEFLECLCRCARDKYGEIKLMSLADGVRGVFQNILGEKTDEAVIRD
Ga0228543_102833	Ga0228543_1028331	F008934	SVFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIYTNGRPKGGSAHDNYGGRNLASTGHGADSLASGDYNYKDGRIADAWIDDHGMGGKTEVWRRDAQGFKDGEKYIEFGEMAHVQVGKNRNH
Ga0228543_104832	Ga0228543_1048322	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHPQRTARRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228543_105581	Ga0228543_1055811	F042124	SINGPAGGRPSRSPSRSDVAKAASLAEEPLIPPVVRVKNSAKAGRPFSNYQKHQAKTQALKGHTIHITSVGPYISRPEQRNLDDQGLRYRSIHKEAFKPAGLWDKYEPPLGGWGFAAAGFVLPDDLPETAKRFGSFYNTHLHQFRATAPKGNIYM
Ga0228543_105964	Ga0228543_1059641	F087102	VALGAGATSQARTGATSRPRDAFSMIYEETIDAVFKADSRAAGLAKLRPYLDANMSKASADAFQECCGKLFVLSRVHTSMEPEVSFAKVQEIIDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPADEVGALLDRYRWPHDAKRTQVMCILRKILEAVAEIRTTSDAAVRGSESIQEARLILNHSHERL
Ga0228543_106346	Ga0228543_1063462	F104622	QAITVYSMEFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFIPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGDGAGAADRVEEFQPLEDDAAQVA
Ga0228543_106353	Ga0228543_1063531	F022338	VFHLIMLLTDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228543_106442	Ga0228543_1064421	F010978	NPLERTSVQLMLVVAGIALFANSAVDRTDDGLPWEVTLAGFCVFAVVFCAIYAKKTEVALSIVTMIAIVMPTYYVHNYEVPASNWELGSMFPLKTSKEEVLRGCFKAAPNASRFDKMLPFDLSLAHFSVLPPGLALRVNTSEIYHSGLKLDDPLTKERTHDYLLFSSPRKVKEKTESLVLLARVPSKFEVWPKNIEDYSFSLQTASNIVAPPTMFGEVTKLDKGPAIEILQRKHHLRPFMLDVYRVEYVYE
Ga0228543_106784	Ga0228543_1067841	F039928	EDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF
Ga0228543_106813	Ga0228543_1068131	F013853	KISQPIAETGSKWESYSKFRLGGMLSKVPRHIRVAGDPNRLAFTLNYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGVIAGFQWLPNLVLLVGLTNGYMVTVDFGALIKLQQSNKLPDRVSAMGTSRVFNEYLQDVSAFYTANVGQRVACCGDTMVKIVHRTGVELEVHLEVDLDRQAKIGHYLDKVDWDDSAKAFACSATDGFLYVHEILD
Ga0228543_107551	Ga0228543_1075511	F095000	ERDGLRNELQHKHDELAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228543_108189	Ga0228543_1081891	F104431	AHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRNASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPDCQLPRKHKVGNLHDQHSQLHMAEEAFKCFEGATTVVVADDR
Ga0228543_108369	Ga0228543_1083691	F039966	MTEGQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPMIAAAELAVLREMCEADSMPARLEQCLISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVSR
Ga0228543_108798	Ga0228543_1087981	F087102	AAGLAKLRPYLDANMSKESAAAFQECCGKLFVLSRVHASMAPEVSFAKVQEITDTLSRECSMASHMAAPLVAGLKRFVEHRILPNGALDHLTEHGFRLPADEVGALLDLYRWPHDAKRQQVMCILRKALEAVAELRTTSDAAVRGSESIEEARLILNHSHERLVRTMESVLDEHATRADPTLVLGQSLFVAVSRVAQVQEQENVRRLQSRSWPPLHSRVQTVFAEAE
Ga0228543_109900	Ga0228543_1099001	F076132	PTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRT
Ga0228543_110370	Ga0228543_1103701	F076132	GKMDKEEVVPVAFALSNMLNEVILPRAKRENSAAFRSKEMQDPKMIAVLDVYKPKLKEWYDKKVLDDSDQKGMAVSDKIGFQEWLRVLDRQDIVGEWEVEQMSEITGDESTKGVVRCRLSIPTCKAAFMDSQSAEQLGVAQADATSEQSVLDFDEWLECLARIANAKYQSIKQMDPAAKVKAFLQNFFGEKSEEDCMREATYIRAVR
Ga0228543_110600	Ga0228543_1106001	F088418	GLARHSLAQSWAFCMRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVSAETIKALDAHRAAE
Ga0228543_110941	Ga0228543_1109411	F074330	PSMVLNPTSTGFLLLASVVVLIASLFLTYDPVDLCAASNGLKFCVGFNNAYAFVMCIMEIIVCVVALFMLKMKQAILQKVLVAKAPLIGPITVEGLISLFLFVNITIGAFILTNMPEHGFDQTNNGYFACWAGACASLGNIGVDPAKMVDDLRAKTGVSPAFGLIISSIMVLLQSYPYLAFDPTQMPADGGPWRPVPVWH
Ga0228543_110962	Ga0228543_1109622	F080844	GLLVLEVGASQMPPAQSPCSIGAVTTRLTVTVPQGINGGDLVRVAAPDGSYHSIMVPGGLASGQQFSVELLATSSSSAEVQKLRLELDAERALRRETQQEALRNRSALETLQIKRAADHAFFRDVIKRQRRCIEALEELM
Ga0228543_113579	Ga0228543_1135791	F043734	RSAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228543_113990	Ga0228543_1139901	F039966	QRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEVALGMVDVVTLAELKGVNRSW