3300031409: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031409
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267076 | Ga0228555
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_4mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30781557
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	4
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	8
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F019772	Metagenome / Metatranscriptome	227	Y
F024700	Metagenome / Metatranscriptome	204	Y
F039928	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F043264	Metagenome / Metatranscriptome	156	Y
F043734	Metagenome / Metatranscriptome	155	Y
F048057	Metagenome / Metatranscriptome	148	N
F048727	Metagenome / Metatranscriptome	147	Y
F050807	Metatranscriptome	144	N
F054536	Metagenome / Metatranscriptome	139	Y
F055416	Metagenome / Metatranscriptome	138	N
F068421	Metagenome / Metatranscriptome	124	Y
F068493	Metagenome / Metatranscriptome	124	N
F074505	Metagenome / Metatranscriptome	119	N
F082271	Metagenome / Metatranscriptome	113	N
F089700	Metatranscriptome	108	N
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228555_101463	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2121
Ga0228555_101974	Not Available	1903
Ga0228555_107770	Not Available	1033
Ga0228555_110077	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	894
Ga0228555_110172	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	889
Ga0228555_110176	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	888
Ga0228555_110756	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	858
Ga0228555_111487	All Organisms → cellular organisms → Eukaryota → Haptista	826
Ga0228555_112416	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	788
Ga0228555_112699	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	777
Ga0228555_115824	All Organisms → cellular organisms → Eukaryota	666
Ga0228555_116387	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	649
Ga0228555_117500	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	619
Ga0228555_119045	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	582
Ga0228555_119573	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	570
Ga0228555_119905	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	563
Ga0228555_120483	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	551
Ga0228555_120985	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	540
Ga0228555_121173	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	536
Ga0228555_122502	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228555_101463	Ga0228555_1014631	F095000	DAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228555_101974	Ga0228555_1019741	F050807	DTCTASVQGRALAGQLAGAMADDDEPTFKPTSAASGKPNIGLNLSAMAEGDMELKATDFLTTARASNEVAITVRGNAKVKAKRILQLLPAILGKERCKAGWRPKGSQIAVACVKDGNCILSLYSRKQMPKPVEVHNLGPGTPTWLDWDCQGTSLAVMVEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPV
Ga0228555_107770	Ga0228555_1077701	F089700	VGLRVAMPAKATAQKTMAGASVFDPTTAKCGLVDGGEADGVASSNEMLELMNNHALLMQSSTGGKSLLMGNNRDADGTVDRSPPPTPEVKKILKEVKRGILRYGIDMIMEFRTQGATQYGTITKSRFHSIITTTFGNQKNFFWDDEKLKILSTHYGTGATDMKLGGQRQVAWMDFCEDLGETDGSYQENAKYLEGYEGFNTLYADAVLADAVVDPMGLKPTDDNPYN
Ga0228555_110077	Ga0228555_1100771	F054536	FGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228555_110172	Ga0228555_1101721	F102393	FFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228555_110176	Ga0228555_1101761	F007736	QGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALG
Ga0228555_110756	Ga0228555_1107562	F104622	EFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGDGAGAADRVEEFQPLEDDAAQVA
Ga0228555_111487	Ga0228555_1114871	F048057	KLRKLREVAAEQAIRQAPPHPFLAGVSDDEPFWRDLPDILQSQILVMIDNGMPTKKNPKPRPVERILWAGTPHTRKRTILLLVLLWAVTLAVPAILLEDLVDEVGGWLALAWALFTVFLFVPRLTRGSREVFALTSQRAIVSRRTMYCSIHSEKFYYSDIASAKLTPHRDGTATVVLTKTKVMYKPTERITFDRIRDVRGAERVLGRMLPGDVAHDAGFPESDEPLPYEPR
Ga0228555_111801	Ga0228555_1118011	F068493	SESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLSQMLNRGLSRGFSAWLEMAIERAVFLQKLRKGLSRIVNRKLALGFDRWIAAFAPRDDPMSKALLYFLNRELSRGWVAWYETWEVLKAKRESMRKSLGHLLHRGLSRGWGAWMEMLEERAAFLQLLSKGVFFMLNRKVATGFAALRSLSPPRTADPMSRALNYFMNRELAHGWAGWQTAWVEQKAKRETMRKSLGHLLNRGLSRGFGAWLEMAIERAVFLQKLRKGVSRM
Ga0228555_112416	Ga0228555_1124161	F082271	MASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPSKRSVRKAINSWIEYVYTIRALSRGAAAMRLREERVAFSTWHEHVWSEGERDAALRRAVSSMMQSSVRASLNTWMSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVMMQRRSMVVAVASLIRSMELWGLRAWCAYAELVRMNQEEVETPLRQAIQSMSIRSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMAS
Ga0228555_112699	Ga0228555_1126991	F048727	PVASGHMSFAMAVRFNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG
Ga0228555_115824	Ga0228555_1158241	F024700	RTDSRSSPSPSGGSAGRRVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228555_116387	Ga0228555_1163871	F039966	LRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLGRCEGQPAPTELAEITD
Ga0228555_117500	Ga0228555_1175002	F043264	VSTNTSLTSALANPNVGHIVLAPGTYNLSAELNITRSVVLEAAVAGSVVLNAQASYSSQRRVANINPGPSGVVQVIGLNITGGYVSGFSCNAAGCT
Ga0228555_118354	Ga0228555_1183541	F068421	RSFDDGSMHLYSSAFRDGKPVDNHGKEIGGMGAKAITAYRRHDTQKGTLEGESATFTPIDEDNATLRYFAATVMKEHERGWVAGPHTVPWNPAPYRQVPYELRGLAVKTNEPWIEDVKANPEMNMATSGFNRLDDGQTDSSALLFQRRKEEDASIAANRGLIPWHDSPVLWRFPSGQAGRSIEYGETASTLAQEYNYMN
Ga0228555_119045	Ga0228555_1190451	F043734	ARRCFALYARSAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228555_119573	Ga0228555_1195731	F019772	LRNMLEAGAPISPPSSVPASPVFEWSKIGTDWEADGSTLIASGMLAEERYAVGSKIVRSGKTTFTYTINKVFFPDAHVFVGVAEITDDPENAKTWAFNGPTGNLYIGSKLNEHGQEQRKVHLHAEPEGATVGKQEGMTVDCIVDMDEKKLSFSFNGEEPVDCGITLPDAGVRPWVFMYHEGDSVTLEEAC
Ga0228555_119905	Ga0228555_1199051	F055416	LSFSMVMRPVLRDAAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228555_120483	Ga0228555_1204831	F039928	VSPTFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQG
Ga0228555_120985	Ga0228555_1209851	F074505	WPVWALRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLTVRQMVLQHAAEALADKTKELTDVLGLINNDQLVAELDVWLQHRLQRTTRRIVDGSRTAQIASHGWLTACRSRLMRYPNRADERRALLFMRRGALCIRPFLTLRQAIQGR
Ga0228555_121173	Ga0228555_1211731	F039966	VRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPMIAAAELALLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALATRLNGKRADELRELLGATDDFGSAENRVAALAEPAFSPEGQLSVAAAGSAAGPPALQPQLTLGYAGGAPALQPQPSLSGMAV
Ga0228555_122502	Ga0228555_1225021	F104622	SDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGGSTDLAMSVVGAMDIVAGDVAATADETAEEQGAGDGEGAVDRVEEIQPLEG