3300031408: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_0mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031408
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267060 | Ga0228539
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_0mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17929367
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	12
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007922	Metagenome / Metatranscriptome	342	Y
F007958	Metagenome / Metatranscriptome	341	Y
F009117	Metagenome / Metatranscriptome	322	Y
F025010	Metagenome / Metatranscriptome	203	Y
F028693	Metagenome / Metatranscriptome	190	Y
F030329	Metagenome / Metatranscriptome	185	Y
F030342	Metagenome / Metatranscriptome	185	Y
F043734	Metagenome / Metatranscriptome	155	Y
F043744	Metagenome / Metatranscriptome	155	Y
F044865	Metagenome / Metatranscriptome	153	Y
F047450	Metagenome / Metatranscriptome	149	Y
F053251	Metagenome / Metatranscriptome	141	N
F056270	Metagenome / Metatranscriptome	137	Y
F063743	Metagenome / Metatranscriptome	129	Y
F066385	Metagenome / Metatranscriptome	126	N
F068493	Metagenome / Metatranscriptome	124	N
F074505	Metagenome / Metatranscriptome	119	N
F089700	Metatranscriptome	108	N
F090311	Metagenome / Metatranscriptome	108	N
F102393	Metagenome / Metatranscriptome	101	N
F103992	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228539_101119	Not Available	1751
Ga0228539_101174	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	1720
Ga0228539_101461	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1567
Ga0228539_101726	All Organisms → Viruses → Predicted Viral	1465
Ga0228539_102777	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1172
Ga0228539_102850	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1159
Ga0228539_104294	Not Available	944
Ga0228539_104313	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	942
Ga0228539_105309	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	845
Ga0228539_105594	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	822
Ga0228539_105938	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	793
Ga0228539_106171	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	776
Ga0228539_106775	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	736
Ga0228539_108481	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	644
Ga0228539_108763	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	632
Ga0228539_111249	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	542
Ga0228539_111493	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	534
Ga0228539_111512	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	534
Ga0228539_112036	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	518
Ga0228539_112629	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228539_101119	Ga0228539_1011191	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLDDNQKVGIIQWVSTLQALNVIGTFTCTQGS
Ga0228539_101174	Ga0228539_1011741	F009117	AALAEGRPRLQAWYATIPLDDNQKVGITQWVSTLQALNVLGTFTCTQGSDIVGDDRVGTEFKCRLSVPQCKAAFVNSQKETGGAVDDTTLDFDELLECIARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDELPVCVARTACDKYKGVTPMGPGAKVTGFLANLLGDDDEEDVVLAATGGKALKD
Ga0228539_101461	Ga0228539_1014611	F007958	LFSLKPQKRQGTLIAHPAAMGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228539_101726	Ga0228539_1017261	F056270	KKWLEVWQRLELTDMYYFPLWEKGVHDLLQKHFSELSLIFLAYCRSLLGSDSAEDAMEMEMAEFHDFVSECGLETKLITFDLMSNMFIKANATNSAQVRDQHAESRRSSETKLDHLQKGDQRMTTGRTTEEKGKVKSKSDGTEAKKDAELVLYEFINMLVRIGFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPRARKDTSAVFRETVMTELSVLKVLDDYRPKLKAWYTAVTADDTGKGGAGANNPSEVTDKLQLEQWKSICIDPGPHCEQDLVGIWECYRESDITGDPACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKDLEKWLACWERMEIMDVHLWPTWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKF
Ga0228539_102161	Ga0228539_1021611	F047450	KPLPGQTLAAHRKWLDCWQNIEIADLHYFPIWEKSVFGCLQECFSDLTNIFAHYSKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETKDLRFDVMQNMFKKANALNNNDAHFQRKAEQGTSAAKEETAGSTSKALATTSPGRSKKAAAQRDDELDQELVLYEFVEVLIRISFWRSNPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSALFKEKLATDKALQSAIESYDSKLKEWFDVHTQSMFLRGQGRKLQFQQWQDLLKKGWGTDVRKVGFTPGGGVGSWQIYQDSEITGDERCRNIFKVSLSLPQAKFAFINSQSLDQLTVGQAKDTSDVTTLEYEEFKECVARCALDKYKPITQMSGAVKIKSFCRNLLGEATTEECLNEATLIKAARYDWLRYSKPLAGQTLKEHKKWLEVWQRLELTDMYYFPLWEKGVH
Ga0228539_102777	Ga0228539_1027771	F043744	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFR
Ga0228539_102850	Ga0228539_1028501	F044865	HDGERPMAAARAANSGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTA
Ga0228539_104294	Ga0228539_1042941	F009117	GEKVAAMIANILGDLNEEQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSALDAQKEAIATFYEMVSAGRPFLELSQWFDALAGKLLFSDVTIDGYVVRLTQPQARAAFVASAASPTEGLTPEELPVCIARTAGDKYQGVTPVGP
Ga0228539_104313	Ga0228539_1043131	F030342	MSLADGVRGVFQNILGEKTDEAVIRDATYIHAERFDWKLAKPLNGQSLAAHRKWIDCWQNISIADLHYFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNE
Ga0228539_105309	Ga0228539_1053091	F090311	ASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMIVAVSSLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWIEYVNALQSVRRATAALRIREERVAFSTWHEHVCSDGERDAALRCAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSA
Ga0228539_105594	Ga0228539_1055941	F066385	ALPAAVGTVAILYSNLANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
Ga0228539_105938	Ga0228539_1059381	F102393	VTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228539_106171	Ga0228539_1061711	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228539_106775	Ga0228539_1067751	F063743	AVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSVTLPGQALKDHKKWLQVWQRLDIGDMYYFPLWEKGVHDVLQKHFKDLCLIFFAYCRSMLGSASAEDAAEMEMAEFKDFVDECGLETKQISFDLMSNNFMKANAINSAQVRDAHQEGRRSAGTKMDGRTTAEVATQKRNDGSETKKDAELVLYEFIGMLVRIAFQRANPTFGNYGNKKAVVHLVNYPGSGMEGNGCLQTMIEDEILP
Ga0228539_107755	Ga0228539_1077551	F068493	LARGWTAWHAEWADSVAARTIMRKSLGHLLNRGLSRGFGAWLEMAIERAIFLQKLRKGLSRMVNRKLAIGFDRWIAAFAPRDDPMSKALLLFLNRGLSRGWVAWYTTWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSMVEELKAKRESMRRSLSHMLNRGLS
Ga0228539_108481	Ga0228539_1084811	F028693	DSSCWALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWL
Ga0228539_108763	Ga0228539_1087631	F089700	GASVFDPTTAKCGLVDGGEADGVASSNEMLELMNNHALLMQSSTGGKSLLMGNNRDADGTVDRSPPPTPEVKKILKEVKRGILRYGIDMIMEFRTQGATQYGTITKSRFHSIITTTFGNQKNFFWDDEKLKILSTHYGTGATDMKLGGQRQVAWMDFCEDLGETDGSYQENAKYLEGYEGFNTLYADAVLADAVVDPMGLKPTDDNPYN
Ga0228539_109745	Ga0228539_1097451	F053251	LDFSSQGRDESKEPTRLKLAMKEGCARATLAEEQEEAPTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSEEPSLFQLIQLIEDALYLDAPIVLKHIQPAVASRLNGKSAPELCTLIGAGGDFGGAEEQVSQLFQKIMGAEDAVANRTPFEMLAD
Ga0228539_111249	Ga0228539_1112491	F103992	SPRGVHERGPRPERSALEMGESAAYVLKGIEDMLQTEVKYFSMVCKDGEKMYICLGKRALFLIDFEPPFQEQFYYAWVRRVIIDSDNLLLFQIDFHEGRQSLLLESFERSRLCDELAICWKADAMFRQWRWQPFPLKRGQCDVGRRDRARTAVEFTAAPQKMQRIEFKGYQLFLDDAYRE
Ga0228539_111493	Ga0228539_1114931	F007922	ANFRELASIFRSYCKSVGEASSDDSSKTMDLEEFNDFVIDCMLETNFGQAYTFENMKEQFSRADKSGKGLAGPQANAELVLYEFLNVITRISFWRINPECGELEMDHQDTILPVPQCLEKTLRECILPKAHRDDAGQFRGTVMQMPEVQASLAEGRPRLQAWYATIPLDDNQKVGIT
Ga0228539_111512	Ga0228539_1115121	F043734	AAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228539_112036	Ga0228539_1120361	F104431	LCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVG
Ga0228539_112629	Ga0228539_1126291	F025010	LGLASATIVLKFMDDVVFATIRMKETFRVAHELFIIYLREMDFDPARALHMGNVFRRGGQDTLLSEARRNAAASFRTCGGTPQLDGAKKSDAKNPKTDTKPNGKSDDSSKKPCPDFNAGRPCKKLKPDGTCVFAHRCNQFVSDKGPGGYCFGVHARCTGCDYDAAKK