3300031389: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_16mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031389
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267067 | Ga0228546
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_16mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13903341
• Sequencing Scaffolds: 14
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F010299	Metagenome / Metatranscriptome	305	Y
F028443	Metagenome / Metatranscriptome	191	Y
F038555	Metagenome / Metatranscriptome	165	Y
F043734	Metagenome / Metatranscriptome	155	Y
F043744	Metagenome / Metatranscriptome	155	Y
F047450	Metagenome / Metatranscriptome	149	Y
F053251	Metagenome / Metatranscriptome	141	N
F056270	Metagenome / Metatranscriptome	137	Y
F063286	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F074505	Metagenome / Metatranscriptome	119	N
F076132	Metagenome / Metatranscriptome	118	Y
F087102	Metagenome / Metatranscriptome	110	N
F088418	Metagenome / Metatranscriptome	109	N
F095000	Metagenome / Metatranscriptome	105	N
F100254	Metagenome / Metatranscriptome	102	Y
F102720	Metagenome / Metatranscriptome	101	Y
F104431	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228546_100191	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2915
Ga0228546_100884	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1616
Ga0228546_101918	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1171
Ga0228546_102631	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1021
Ga0228546_103195	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	931
Ga0228546_104797	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	762
Ga0228546_105195	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	731
Ga0228546_105917	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	681
Ga0228546_106306	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	658
Ga0228546_107697	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	590
Ga0228546_107936	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	581
Ga0228546_108344	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	564
Ga0228546_109759	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	513
Ga0228546_110046	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228546_100191	Ga0228546_1001911	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228546_100884	Ga0228546_1008841	F056270	QYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDA
Ga0228546_101706	Ga0228546_1017061	F063286	TVIKADRYDWQKQTKMLPGFSPAQHKLWCQCWEKLVLMDIHHFPLWEKGVHDTLQQHFPALMRIFSHYSKGISGIDSAADALEMELEEFHDFVKDAKLETRMINFTTMTNVFAKANASNTAEAFEQRQREKRNSQVQSELEDAAFTKNVNKPISPKKGAFPDVFLDKSGEMDLATMNKGKNAKPDNRLQLTEFLGCLVRISFLRANPKHGQYDNKAKLIELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAGEGGGLGEGAFVGDCTVSRESDITGDERCKEKFTCRLSTLEAKFAFLNSQSLEQMTAGDSSDTDLMATLDFDEFIECLARCARDKYGEIK
Ga0228546_101918	Ga0228546_1019181	F104431	HLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG
Ga0228546_102631	Ga0228546_1026311	F043744	SSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRAYCKSVGEAASDESSKTMDIEEFHDFVVDVGL
Ga0228546_103195	Ga0228546_1031951	F007736	INQWVSTLQALNVIGTFTCTQGSDIVGDDRVGTEFKCRLSVPQCKAAFVNSQKETGGAVDDTTLDFDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDLYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADKFDEVPLPGCLSDMLTKLVLPNARRETHAQEFLEKIWPMSEVSSA
Ga0228546_103691	Ga0228546_1036911	F068493	KRESMRKSLSHMLNRGLSRGFGAWLEMAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQHLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSLGHLLHRGLSRGWGAWMEMLEERAAFLLKLRKGLSRMVNRKLALGFDSWTRSLQGSTVMSKGFFHMMHRELSKGLRAWQLMIEELKAKR
Ga0228546_104157	Ga0228546_1041571	F047450	LKFDVMCNMFKKANALNSNAVMQQRKQEAGTSAAKMEGVGSASKAMAQTNKRSKSANKGREDEMDQELVLYEFVEVLIRIGFWRANPFHGINKLANKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKAMLSALATYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGIDQRAQGYTPGNGVGNWEIYQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTSDVTTLEYEEFKECVARCALDKYKPIT
Ga0228546_104797	Ga0228546_1047971	F028443	QILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKMLPGFSPAQHKLWCQCWEKLVLMDI
Ga0228546_105195	Ga0228546_1051951	F010299	LLKVMGRGGAVAEWQHEGLRRNAEKHFDAAIGQLMVDGVGDQTRVQLTTSFGKQLTELTAKFLESPPMQLQAIAAMRRKTGKAPKPPRGIRAGVGLVGALRNQFGGGQGNLQTYAGYVDGLNSVHVMYANDGAIADSSGAEPPPFRWQPKMNFDISI
Ga0228546_105917	Ga0228546_1059171	F053251	VRARDGEEVTLSRDSARLMCTLKDLMDLATTEDDVYPMPKIMASTLQMVCKLNDPDYTWPSSDEHSVVQLIQLIEDALYLDAPVVALKHIQGAIATRLNGKRTLELGPLLGAGGDFGSAEEHAASSCEPAFAPEDFEAPQQPGSSTAPPALLQQPSFSADAMEAALGLVDVATLAELKGVTRSW
Ga0228546_106306	Ga0228546_1063061	F095000	ANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228546_107309	Ga0228546_1073091	F076132	ATKEPGKVKMGDSNYEAKKDQELDLAEFMNMMVRIGFWRANPGFGLHGNKDEVVSVPLALSTMLNEVILPRAKRESTAEFRTKEMTDPKVLTVLDQYKSRLREWYDKKVADDSDDLAGKSAGIISDKLQFEEWLRVLDRQDIVGVWEVEQMSEITGDESTRGNIKIRLSIPTCKVCFVDSQSQKDAHTALMGGKSDEASDQA
Ga0228546_107697	Ga0228546_1076971	F076132	AELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVK
Ga0228546_107936	Ga0228546_1079361	F102720	DDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDERCRNIFKVSLSMPQAKFAFIDSQNPDQLGVGQQTADSASTTLEFDEFKECIARCALEKYAPIKQMSPAAQIINFVKNLLGTENTEECLNKATLIKAQRY
Ga0228546_108344	Ga0228546_1083441	F043734	RCFALYARSAAMMSFFRAKQLGIPAARWGVAAGSIGFFLLYEDLPQLILQTPYGNFPGWTGVAVAFGMMKDPKAE
Ga0228546_108739	Ga0228546_1087391	F100254	RANPMWGSKYNKMDLTPVPDATSILLEECILPNARRDTSAEFKKVLAGDAATQAVLVEYRAKLQAWVRPLLRKERRIDNPNPQMTYRMWAELMDGPEPNANAFSRAKAACPKMVGEWFLTQESQITGDERTSKKNQMTFKASLSLAQARWNFLRSQAIEQIEGGEVDAEGGKDGQGQGTLDF
Ga0228546_108773	Ga0228546_1087731	F038555	AKVYGQEEPPAAEDELEWETRYFVLYDSRKMVHFDGMQNGEPVGDRGLIDLETIQSVEKVLGVPTFVMKGYKKVYLFKLEPHDEVMMRTWIGAISVELSSQ
Ga0228546_109759	Ga0228546_1097591	F087102	DAVFKADSRAAGLAKLRPYLDANMSKESADAFQVCCGKLFVLSRVHTSMAPEISFAKVQEITDTLSRACSMASHTAAPLIAGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVFHILRKTLEAVAELRTTSDAAVRGSESIEEARLILNHSHE
Ga0228546_110046	Ga0228546_1100461	F088418	SVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSAT