3300031388: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031388
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267080 | Ga0228559
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_8mM_2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14879567
• Sequencing Scaffolds: 20
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	13
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F007922	Metagenome / Metatranscriptome	342	Y
F008291	Metagenome / Metatranscriptome	335	Y
F024700	Metagenome / Metatranscriptome	204	Y
F024710	Metagenome / Metatranscriptome	204	Y
F030329	Metagenome / Metatranscriptome	185	Y
F038555	Metagenome / Metatranscriptome	165	Y
F043264	Metagenome / Metatranscriptome	156	Y
F043744	Metagenome / Metatranscriptome	155	Y
F048727	Metagenome / Metatranscriptome	147	Y
F053778	Metagenome / Metatranscriptome	140	Y
F055416	Metagenome / Metatranscriptome	138	N
F063376	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F074330	Metagenome / Metatranscriptome	119	N
F082271	Metagenome / Metatranscriptome	113	N
F087102	Metagenome / Metatranscriptome	110	N
F089700	Metatranscriptome	108	N
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228559_101056	Not Available	1663
Ga0228559_101690	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1376
Ga0228559_103137	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1009
Ga0228559_103214	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	995
Ga0228559_103296	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	980
Ga0228559_104678	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	815
Ga0228559_105351	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	756
Ga0228559_105642	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	734
Ga0228559_105716	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	726
Ga0228559_105971	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	708
Ga0228559_105973	All Organisms → cellular organisms → Eukaryota	707
Ga0228559_105980	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	707
Ga0228559_106152	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	696
Ga0228559_107389	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	624
Ga0228559_107815	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	604
Ga0228559_108784	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	562
Ga0228559_109232	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	545
Ga0228559_109428	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	538
Ga0228559_110045	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	516
Ga0228559_110262	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228559_101056	Ga0228559_1010561	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQAALAEGRPRLQAWYATIPLD
Ga0228559_101690	Ga0228559_1016901	F102393	MLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKKDKDKNFTGAKDMELVRH
Ga0228559_102573	Ga0228559_1025731	F024710	PSAAEQRSAAKMPCYWAGNSTPSPIFRTNRSGNGVGSSPGINPITPYTTASLDYRASWISGQTVADTKAAMTNPNIQGKLFGEAINNESKAFANSMARPAKPTVLPPPVKVQHYNETSGLERSLPTNVPDHPTAIQVNGLRQERTEHVMCPGHVFGVNSYDARVLCGNWAEERSDKSYNPSDLKASTGNDWWMETTYGEMTKNRSHLVRPPKGSNSDTMYTQKGSAFATGVKEESKSSNAEPCVPEVDDYLKGDHRSASRRPGNYVSYQAGRQHLIAAVGGKINELPFYESTTMAGYQDPAEKVLPNCTVRCDLKYKPPFQIRDPGRDGKSKMLCTVKSNEFACDDPVYNSTQIIGRPVKGKQNTYTVESY
Ga0228559_103137	Ga0228559_1031371	F043744	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIR
Ga0228559_103214	Ga0228559_1032141	F082271	GLRTWSAHAALVRRQRERVEETARRAIKSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRSMELWGLRAWCAYAELVRMNQEEVETPLRQAIQSMSIRSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAW
Ga0228559_103296	Ga0228559_1032961	F007736	GRSRLQAWYATIPLDDNQKVGITQWVSALQALNVIGTFTCTQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNAQKETGGAVDDTTLDFDELLECIARCGCDKYRAVEQIKVGEKVAAMIANILGDLNEDQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLP
Ga0228559_104678	Ga0228559_1046781	F007736	LEQTLRECILLKAHRDDAAEFRVKTMQMPEVVQALNEARPRLQAWYASIPLDDNQKVGMSQWIGALEKLNVIGTFTCMQGSDIVGDDRVGTEFKCRLSVPQAKAAFVNGQKEVGGGEDVSLDFEELLECIARCGVDKYRPINEITTGGKVAAMIANILGDLNEEQVIKKATYIHAERYEPQGDAAWVALWRKLNLSTLPGFPLWEKQVHAVLHDKRVALASIFRAYSASSLLGSATDMDMEEFHDFVIEANLITDKYGFDTMVGQFTKANA
Ga0228559_105351	Ga0228559_1053511	F089700	AMPAKATAQKTMAGASVFDPTTAKCGLVDGGEADGVASSNEMLELMNNHALLMQSSTGGKSLLMGNNRDADGTVDRSPPPTPEVKKILKEVKRGILRYGIDMIMEFRTQGATQYGTITKSRFHSIITTTFGNQKNFFWDDEKLKILSTHYGTGATDMKLGGQRQVAWMDFCEDLGETDGSYQENAKYLEGYEGFNTLYADAVLADAVVDPMGLKPTDDNPYN
Ga0228559_105642	Ga0228559_1056421	F007736	FDELLECIARCGVDKYRAVEQIKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATAPPKGVSPDAHRDWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKDNVKTDKSLVEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPE
Ga0228559_105716	Ga0228559_1057161	F048727	FNTTVSAADARLANMSYAQKISEQRLQRSQERSKWYQLSEEERSEILFPAPKKIQTEYYDATPEQTRQVESHFRGEGLHWRPTAESQQVSVKEVIKNDVDNPCNKAPFQPRRPWHAGGGGYDSRLG
Ga0228559_105803	Ga0228559_1058031	F007922	WLECCCRTACKKYSAIKQMDASQKVKSFMQNFFGEATEEDCVRTATYIRAVRFDLSESRPLKDESPEEHAAFLTEFKQLDLQGLYGFPLWEAEVHDLLHANFRELASIFRSYCKSVGEASSDDSSKTMDLEEFNDFVIDCMLETNFGQAYTFENMKEQFSRADKSGKGLAGPQANAELVLYEFLNVITRISFWRINPECGELEMDHQDTILPVPQCLEKTLRECILPKAHRDDAAEFRA
Ga0228559_105971	Ga0228559_1059712	F043264	MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNT
Ga0228559_105973	Ga0228559_1059731	F063376	VPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228559_105980	Ga0228559_1059801	F007922	YIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPKAHRDDAAEFRAKAMQLPEVQAALQEGRSRLQAWYATIPLDDNQKVG
Ga0228559_106152	Ga0228559_1061521	F008291	TRSATRRAAEANGLRMANIPDLRSVQIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228559_106732	Ga0228559_1067321	F038555	SFGAGEDESVDSDYDNDEDAFADLGLELLSGSLKLAKVYGQEEPPTAKDELEWETRYVVLYDTRKMCLYDGMQNGEPVGDRGLIDLETIQSVEKVLGVPTFVMKGYKKVYLFKLEPHDEVMMRTWIGAISVELSSQ
Ga0228559_107389	Ga0228559_1073891	F074330	GPSRNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISRSWSSVRTPRGSNSRPPASAAPRRVDA
Ga0228559_107815	Ga0228559_1078151	F053778	RLSIPTCKAAFMDSQSAEQLGVAQADATSEQSVLDFDEWLECLARIANAKYQSIKQMDPAAKVKAFLQNFFGEKSEEDCMREATYIRAVRYDISDSVPLKDESPEEHAAFLSEFKRLDLQGLYGFPLWEAEVHDLLHTNFRELASIFRAYCKSVGEAASDESSKTMDIEEFHDFVVDVGLETRLQVAKGAAAATYTFEQMK
Ga0228559_108784	Ga0228559_1087841	F104431	AIALETLALCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCT
Ga0228559_109232	Ga0228559_1092321	F055416	VMRPVLRDAAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228559_109428	Ga0228559_1094281	F087102	VVYDETIDAVFKADSRAAGLAKLRPYLDANMSKESAAAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRACSMASHAAAPLVAGLVTGLKRFVEQRILPNGALDHITKQGFRLPANEVGALLDRYRWPHDAKRTQVLHILRK
Ga0228559_110045	Ga0228559_1100451	F104622	LKSGQAITVYSMEFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGDGAGAADRVEEFQPLEDDAAQVA
Ga0228559_110262	Ga0228559_1102621	F024700	LALAPTVDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228559_110411	Ga0228559_1104111	F068493	ALGWGAWSEMAAERSEFLRKLRKGLSRMVNRKVALGFYAWRAAVAPRDDHMSKALLHFLNRELSRGWGAWYETWEVLRAKRESMRKSLSHMLNRGLSRGFGAWLEMAVERKAFLQQLRKGLSRMVNRKLALGFASWSEQTQGSAAMSKGLRHMMNRGLSKGWRAWQSM