3300031380: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031380
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267063 | Ga0228542
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_L6_4mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12493080
• Sequencing Scaffolds: 22
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	16
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007736	Metagenome / Metatranscriptome	345	Y
F008934	Metagenome / Metatranscriptome	325	Y
F012945	Metagenome / Metatranscriptome	275	Y
F028443	Metagenome / Metatranscriptome	191	Y
F039966	Metagenome / Metatranscriptome	162	N
F043264	Metagenome / Metatranscriptome	156	Y
F047450	Metagenome / Metatranscriptome	149	Y
F053778	Metagenome / Metatranscriptome	140	Y
F054536	Metagenome / Metatranscriptome	139	Y
F055416	Metagenome / Metatranscriptome	138	N
F056270	Metagenome / Metatranscriptome	137	Y
F063286	Metagenome / Metatranscriptome	129	Y
F068493	Metagenome / Metatranscriptome	124	N
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F076965	Metagenome / Metatranscriptome	117	Y
F088418	Metagenome / Metatranscriptome	109	N
F090311	Metagenome / Metatranscriptome	108	N
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F102720	Metagenome / Metatranscriptome	101	Y
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228542_100213	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	2490
Ga0228542_101095	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1410
Ga0228542_101372	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1279
Ga0228542_102135	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1052
Ga0228542_102610	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	956
Ga0228542_103108	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	882
Ga0228542_104015	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	776
Ga0228542_104238	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	755
Ga0228542_104332	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	747
Ga0228542_105363	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	668
Ga0228542_105376	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	667
Ga0228542_105644	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	649
Ga0228542_105761	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	643
Ga0228542_106011	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	628
Ga0228542_106647	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	596
Ga0228542_106903	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	583
Ga0228542_107862	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	542
Ga0228542_108002	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	536
Ga0228542_108094	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	533
Ga0228542_108677	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	513
Ga0228542_108734	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	510
Ga0228542_108903	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228542_100213	Ga0228542_1002131	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228542_101095	Ga0228542_1010951	F056270	MYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISE
Ga0228542_101372	Ga0228542_1013721	F102393	EPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKKDKDKNFTGAKDMELVRH
Ga0228542_102061	Ga0228542_1020611	F047450	YDWRTATPMAGESAKSFGRWLECWQCLEIADLHYFPLWEGGVFKILHECFESLVQIFAHYAKSIGGSTTAEDAVEMTMTEFKELVKDVGLETKDLKFDVMSNMFKKANATNSGDVRKQRMVEKGNADAQGEFAMNTGTQMALKKNIQQASPKRNAKLNKIRDDELDQELVLYEFVEVMIRIGFWRANPFHGINKLANKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKSMLTALSRYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFD
Ga0228542_102104	Ga0228542_1021041	F063286	YDWQKQTKMLPGFSPAQHKLWCQCWENMVLVDIHHFPLWEKGVHDTLQGHFSVLMRIFSHYTKGISGIDSAADALEMELEEFHDFIKDSKLETRMINFTTMTNVFAKANASDSATVFMERMAGRRNVQVQRELEEIARQAARSAHDGKKGETKFQELPKHLTCDRFSSDYPEPGSMKIKKPDNRLTLTEFLGCLVRIAFLRANPKHGQYDNKAKLVELPGCLKKMLEEVLIPNAKQDMSSLFRDEIAQDAEVQAVFEEYRSKLTFYYQEVNLLTAVKGKIDNKLSMETWMDIARGFLQFTKKKGSKHMEKAKVQTKVGEGAGLPEGAFVGDCTVQRESDITGDERCKEKYTC
Ga0228542_102135	Ga0228542_1021352	F043264	MPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLNINPGSLGVVQLIGLNITRGYVQSLDGGGV
Ga0228542_102610	Ga0228542_1026101	F054536	DLSAPAPNYFGKTASKKLNRSPTFSAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTESRSDAAAGMQTSAEELFDMRDDGAVYSGANALS
Ga0228542_103108	Ga0228542_1031081	F090311	SMRACLNSWKYSWICIMVHRRSMNVAVSAMFFSEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLRSLRAAMNTWTALSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRSME
Ga0228542_104015	Ga0228542_1040151	F012945	GNSLMFTDSVICFKELIDKEETAKRQWRGKYGMNKEGWRPVEPFERTGASNCKAELPSGMPSAALRNPYLYRDTVGEDGLAGGAPTRFGGRWDVLNKDKPIDYSHQTGQRVVKKGPHDCYCEIGYNCWSMAGKARTANFGMMGVFEREFYTNTPGELALVWDFKSEEEKVAHAAKIAAMQKQARGEN
Ga0228542_104238	Ga0228542_1042381	F028443	ANPQWGSKYNKKDLTPVPESTQILLEECILPNARRDTSGEFKKVLQADAATQGVLTEYRDRLQAWLRPILRKERSTLNPNPKITYKRWVELMDGPDADTQGARGAKPPCPKMVGEWYLSQESQITGDERTAKKNQMTFKAKLSIPQCRWNFLRSQSVEQVEGGEVDADSSDIATLDFSELLECICRCAVNMYEHMLTTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMWEATVIKADRYDWQKQTKML
Ga0228542_104332	Ga0228542_1043321	F028443	LTPVPESTQILLEECILPKAKRDTSGEFKKVLAGDQATQAVLAEYREKLQNWLRPILRKERRIDNPNPQMTYKMWVALMDGPDPETRERGGSKPPCPKMVGEWFLAQESQITGDERTSRKNQITFKAKLSIPQCRWNFLRSQTIEQVQGGDVDAEQSDVATLDFTELGECIARCAVNMYEHLMTTFLPSHNRKAMTMADATRAWLQNLLFEKTPEMCMWETTVIKADRYDWQKQTKMLPGFSPAQHKLW
Ga0228542_105363	Ga0228542_1053631	F102720	AKRDDSALFKERLAGDKAMLSALATYEKRLKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGIDQRAQGYTPGNGVGNWEIYQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLSVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSPAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEIS
Ga0228542_105376	Ga0228542_1053761	F104622	ASDYLKSGQAITVYSMEFLASLLVFVAGLVADSDLEGSLMLAVRAADIMVYCAFVPMILMGWDNLVCPPLKMFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA
Ga0228542_105644	Ga0228542_1056441	F088418	PGLARHSLAQSWAFCMRCRSVRLLLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVSAETIKALDAHRAAEAQKKGETDAKQ
Ga0228542_105761	Ga0228542_1057611	F039966	RRATSMSRRVDRGTSPFGKAMIDGQERVRLRAREGEDVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQCALATRLNGKRADELRELLGAMDDFGSAENRVAALAEPAFSPGGQLSVATVGSAAGPPALQPQPSLSGMAATEDAKEVALGMVDVGTLAELKGVN
Ga0228542_106011	Ga0228542_1060111	F076965	SRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIELEEFHDFVKDAKLETRMIN
Ga0228542_106647	Ga0228542_1066471	F008934	VFCASGLRMSSLAHLDKDGDGDIDSSEWAAGYAQLGASAPGVPNPAVWYGTLPDGPAFRITQIGMDKLYSAPSQLIDHPEYKDETGKGVIVGYAGHVPRARDKVGGSPLGHLPGTPVSPNGKVGIDMEAMMSGKFKRELPAGREKTFAQHECKPDYTPEARDKGVAGTQKPALYGEGIIPGYGGHKQGAKFNYGSTIY
Ga0228542_106771	Ga0228542_1067711	F068493	MRKSLSHMLNRGLSRGFGAWRELAIERAVFLQKLRKGLSRIVNRKLSLGFDRWNAAFAPRDDPMSKALLYFLNREIARGWTAWYTAWEELKAKRESMRRSLSHMLNRGLSRGLGAWSEFAVERKAFLQQLHRGLSRMVNRKLANGFASWVEQVEGSESMSKGLRHMMNRGLSKGWRAWQSMIEALKAKRESMRKSL
Ga0228542_106903	Ga0228542_1069031	F074330	RNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDT
Ga0228542_107862	Ga0228542_1078621	F104431	LHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGLAESLLFDPGEAHGCLKQFEHVLVAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKETKALKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG
Ga0228542_108002	Ga0228542_1080021	F007736	FKCRLSVPQAKAAFVNAQKETGGSVEDVSLDFDELLECIARCGVDKYRAVEQIKTGEKVAAMIANILGDLNEEQVITAATYITAERFSPGTSPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEANLITDKYGF
Ga0228542_108094	Ga0228542_1080941	F055416	ESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228542_108677	Ga0228542_1086771	F053778	RVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHAN
Ga0228542_108734	Ga0228542_1087341	F104431	MVPTQLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPR
Ga0228542_108903	Ga0228542_1089031	F095000	LDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDA