NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300031327

3300031327: Metatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T20 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300031327 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0134331 | Gp0333265 | Ga0315849
Sample NameMetatranscriptome of plant litter microbial communities from East Loma Ridge, Irvine, California - P3 T20 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size29422266
Sequencing Scaffolds46
Novel Protein Genes53
Associated Families39

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available19
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae6
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 883
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota1
All Organisms → cellular organisms → Eukaryota2
All Organisms → Viruses → Riboviria5
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Miaviricetes → Ourlivirales → Botourmiaviridae → Ourmiavirus → unclassified Ourmiavirus → Erysiphe necator associated ourmia-like virus 482
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea1
All Organisms → Viruses → Riboviria → Orthornavirae1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae2
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Pleosporaceae → Alternaria → Alternaria sect. Alternaria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePlant Litter Microbial Communities From East Loma Ridge, Irvine, California
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Plant Litter Microbial Communities From East Loma Ridge, Irvine, California

Alternative Ecosystem Assignments
Environment Ontology (ENVO)grassland biomelitter layerplant litter
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)33.7417Long. (o)-117.7042Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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