3300031206: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_16mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031206
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267084 | Ga0228563
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_16mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22874790
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	3
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	4
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006207	Metagenome / Metatranscriptome	378	Y
F006495	Metagenome / Metatranscriptome	371	Y
F006882	Metagenome / Metatranscriptome	362	Y
F007736	Metagenome / Metatranscriptome	345	Y
F024700	Metagenome / Metatranscriptome	204	Y
F028443	Metagenome / Metatranscriptome	191	Y
F028693	Metagenome / Metatranscriptome	190	Y
F030329	Metagenome / Metatranscriptome	185	Y
F030342	Metagenome / Metatranscriptome	185	Y
F039928	Metagenome / Metatranscriptome	162	N
F039966	Metagenome / Metatranscriptome	162	N
F044865	Metagenome / Metatranscriptome	153	Y
F046205	Metagenome / Metatranscriptome	151	Y
F062425	Metagenome / Metatranscriptome	130	N
F063286	Metagenome / Metatranscriptome	129	Y
F069666	Metagenome / Metatranscriptome	123	Y
F087102	Metagenome / Metatranscriptome	110	N
F088418	Metagenome / Metatranscriptome	109	N
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F104622	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228563_101778	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1723
Ga0228563_102121	Not Available	1605
Ga0228563_102584	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1483
Ga0228563_103098	All Organisms → cellular organisms → Eukaryota → Haptista	1367
Ga0228563_103648	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1263
Ga0228563_103663	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1261
Ga0228563_106977	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	902
Ga0228563_107221	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	883
Ga0228563_107617	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	854
Ga0228563_108243	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	818
Ga0228563_108953	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	780
Ga0228563_109121	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	771
Ga0228563_109597	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	746
Ga0228563_111173	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	675
Ga0228563_111229	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	673
Ga0228563_113530	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	589
Ga0228563_113800	All Organisms → cellular organisms → Eukaryota	581
Ga0228563_114756	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	552
Ga0228563_115775	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	525
Ga0228563_116599	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	504
Ga0228563_116601	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228563_101778	Ga0228563_1017781	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMCNQFIKANATNSAQVRAQRQDEKRDAQSRGNDEPQWKKKPAAKLKGTSSGEEAKKDQELVLYEFLNMLVRIAFWRANPTFGNFVDKDKDGKKDKEEPTPVAYALSNMLNEIILPRAKRENSAAFRQKEMQDSKLIAVLDSYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFGEMSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVIDVGLETKLHTNKAAAPALYVFEQMKEQFTRADKSGKGLAGPAANSELVLYEFLNVITRVSFYRLNPEYGELTMEHQDTLLPVPQCLDKTLRECILPKAHRDDAAEFRAKAMQLPEVQAALQEGRSRLQAWYATIPLDDNQKVGITQWVS
Ga0228563_102121	Ga0228563_1021211	F030329	LAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKFDVMSTQFIKANATNTAQVRAQRQDEKRDAQSRGNDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTIYPVPFCLEKTLREAILPKAHRDDAAEFRAKTMQMPEVQ
Ga0228563_102584	Ga0228563_1025841	F044865	RFAPHHRAHDGERPMAAARAANSGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228563_103098	Ga0228563_1030981	F006207	DVVTCVARTQEGIGIFLWEVAPETEAQASTTRSSMTHANVPLRLAPSITVATTFCMWSKKYLQLAIGTSAGKVIIFNKPQGVMQLHDRKGKHGAPVTCGDWLSDNRLGLASGTRVKISKQLPEEGAQWESYSKFKLSGMLSRVPRKFKDAGAPRMLSFSLSMPPFVAVCIGDNYMLVFGTGTNNNEDVGLTFPDDYGPITGFQWLEDDIVLVSLANGYVTSVDFGQMVRMRRQHGLPEAVKATGTTKVFNEYLTCLTYSPKSHRIACVGDKGFKIIVREDAELEVLVDHTLEYELSIGNCIEHCRWDENGNSLVVTATDGYLWCFDFSNLPVR
Ga0228563_103648	Ga0228563_1036481	F006495	MARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228563_103663	Ga0228563_1036632	F069666	AGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228563_105662	Ga0228563_1056621	F063286	TVIKADRYDWQKQTKMLPGFSPAQHKLWLKCWSQVTLIDVHHFPLWEKGVHDTLQQHFSALMRIFSHYSKGVSGVDSVADALEIELEEFHDFVKDAKLETRMINFTTMSVIFAKANATNTMEAFEQRMRERRNATVVAEQEVTADKQAVNRPISPKKGAFPDAPIPLPKEEKGKTKREGVEAKKPAKPDNRLTLSEFLGCLVRISFMRANPKHGQYDNISKLVELPSCLRKMLEEVVIPNAKQDQSSLFREELLSNAEVQAAVEEYRERLVFYYNEVNQLTALKGKTDNKLSMETWMDVCRGYLHFSKTKART
Ga0228563_106977	Ga0228563_1069771	F028693	CWALCQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIKRPEQLTQSFLEEYEQRPPWLKY
Ga0228563_107221	Ga0228563_1072211	F102393	RVAAFLLHPHSRPPTSSTRMMLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228563_107617	Ga0228563_1076171	F095000	CMRAEVHALTEERNGLRDERDGLRNELQHKHDELAAARDSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228563_108243	Ga0228563_1082431	F006882	LSRAMLRNMLDGDGQDQYDSGGWCFPKPIPPQNKNDGQTRVLDPMMPVNTNEAFVAGLREYPDEDPRLWQAHKKEWQSVQGGSILTICKLHPSQRPPMVRPEDDNELGQQDVDEFIKKLVETGQPIIKAGGLGKNSLSAMGAKGILGAPKGVESNNFDGQRGFTGLTE
Ga0228563_108953	Ga0228563_1089531	F030342	ARDKYGEIKLMSLADGVRGVFQNILGEKTDEAVIRDATYIHAERFDWKLAKPLNGQSLAAHRKWIDCWQNISIADLHYFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSA
Ga0228563_109121	Ga0228563_1091211	F028443	YNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLASDASTQAVLGEYREKLQNWLRPILRKERTTQNPNPQMTYSLWVALMDGPDSEQKESGKKPPCPKMVGEWSVQQESQITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWLKC
Ga0228563_109515	Ga0228563_1095151	F087102	RAAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEISFAKVQEITDTLSRACSMASHTAAPLIAGLKRFVEQRILPNGALDHITEQGFRLPADEVGALLDRYRWPHDAKRTQVLHILRKTLEAVAELRTTSDAAVRGSESIEEARLILNHSHERLTRTMESVLDEHATRLDPTLVMGQNLFLAVSRVAQAQEQENVDRLRSRSWPPLYSRVQTVFAEAEARAKAAVKAEAKAKAKVAEEVA
Ga0228563_109597	Ga0228563_1095971	F039966	ADPGAQRVRLRAREGEDVEWTHRVAQRASTLKNMMDDAPTEDGVYPLPTIAAAELEMLMEMCEADSMPARLELCSIPELFRLVEGASFLDAPGALNHAQRTLASRLEGKRADELREVLGATDDFGSVEDRLAALAEPAFSPEGQLSLATTGSAGPPALEPQPSLSGVEVTDDAKEAALGMVDVGTLAELKGVSRSWLVLARRVLCSRLSRCEGQSAPTQLAEITDLNIKVLVDAGRPWEAAAAGRMLP
Ga0228563_111173	Ga0228563_1111731	F104622	GSLMLAVRAADIMVYCAFIPMILMGWDNLVCPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA
Ga0228563_111229	Ga0228563_1112291	F039928	PTFRRTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF
Ga0228563_113530	Ga0228563_1135301	F046205	SLSMHQVRMAFMNSQPAEQLQGAKSMGGDAMETLSFDEFVECLCRMGVDKYHKHVPEVAPAQAVEGSFRNILGEATPDEIVIAATYIHAVRFDAETLPLLKDESKFEHRKWLDCWSRMEIMDMYMWPLWEKEVHDILHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDIGLETKQYKFDVMCNQFIK
Ga0228563_113800	Ga0228563_1138001	F024700	LMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228563_114756	Ga0228563_1147562	F104622	GEGGTLETLYLMFIALLLIPVSIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGPFEEVQPLEGDAALLA
Ga0228563_115775	Ga0228563_1157751	F007736	IKPGEAVSAMIANILGDLNEEQVITTATYITAERFTPATEPPKGVSPDAHREWLMTWEKLQLSLLPGFPLWEKDVHDVLAGNLESLQSIFKAYAAGTIGTGAQEMDMEEFHDFCIEANLVTDMYGFDAMSGQFTKANAGSNDTVLELHEFLTMLVRISFYRANPHYGMKSMAKKD
Ga0228563_116599	Ga0228563_1165991	F088418	LLVAMLATQHTDFESFANALGGLPNQPPVPMECEPSPSPIDVDTKAIVQQVVNVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKVPAMNKRDKRALAVLELMPVTRDCPQATIALLMSHASTHRSAADIKVLRRCGAQAVKIAEDGLKQPTSATSKVVS
Ga0228563_116601	Ga0228563_1166011	F062425	SLSALVLDMGKKGKGKAPAFLETPEALAPFSVQVRDIIATPLGVEATVVGVGSKDGALYLCWPGGIISPASPAPAKAKNKSELEAFGYARRPQSAHIQRDITERWRTQYEQRRYGKPGPKTAAIKLPLGPNGSAGSAAFAAFAASEAAKRPQTAP