3300031205: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_16mM_1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031205
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267082 | Ga0228561
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P5_D6_16mM_1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11724739
• Sequencing Scaffolds: 18
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005228	Metagenome / Metatranscriptome	407	Y
F006495	Metagenome / Metatranscriptome	371	Y
F007565	Metagenome / Metatranscriptome	348	Y
F007736	Metagenome / Metatranscriptome	345	Y
F028443	Metagenome / Metatranscriptome	191	Y
F028693	Metagenome / Metatranscriptome	190	Y
F030342	Metagenome / Metatranscriptome	185	Y
F035605	Metagenome / Metatranscriptome	171	Y
F039928	Metagenome / Metatranscriptome	162	N
F042134	Metagenome / Metatranscriptome	158	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228561_100779	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1572
Ga0228561_101479	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1234
Ga0228561_101774	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1139
Ga0228561_102374	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1002
Ga0228561_102678	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	952
Ga0228561_103209	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	878
Ga0228561_103295	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	867
Ga0228561_103411	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	853
Ga0228561_104738	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	716
Ga0228561_104930	Not Available	702

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228561_100779	Ga0228561_1007791	F056270	MSPAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRTSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLSMEQWMRVCDEKDLVGIWQCYRESDITGDPACKTEYKWRLSMPQVKMAFMDSQPSDQIGAAQSSGTDALAVLDFEEFLECCARLGIDKYRAVREVSPALAVQGFLQNLLGEKTPDEVVIEATYIHAKRYDAKETKPLKGESQADLDKWLDCWSRMEIMDVHLWPIWEKEVHDIMHPLFKELQLIFLAYTRSISEDSAEDAMEMSMDEFHDFVVDVGLETKQYKF
Ga0228561_101360	Ga0228561_1013601	F085009	WYIAESFAQPAPGPPAKEATGAAAPKCFFCLRSNAGTPPLEMPWERAKDGVLPGPFLTPISLTHAPPTSVLAPLTTFEIGDFVRANWAGRGVMYPGEVLAINHEDETLDILYDDGDFESHVPRQRVHPVSIELTDAFHAFGVGDVVKADLKGHGSWYTGRIIAIDTKFRVFTIKYENGHLEKHVPPSRVQPMSTGHIKQDYVHGERVRANWQSCGTWCLGRICSVNHSEGTFNVQYDDGEIELHVAAHSLQPAEDADFKAAEAEPLPFACTLVSKASGGFGSSSGLGSSSLGYGSLAR
Ga0228561_101479	Ga0228561_1014791	F006495	ASQQRPNMARVAYGATSAADDDDDIRFGSMGYTTELSEDYVTTAQYMARDLDDPYAYEKKPIHYIPGYTGHLPLNRERFGVNYREASAATIAMQKSKGVHHPVTDLSAPAPNYFGKTAIKKLNRSQKFIAADQVAQEEATTNQQKYGHPHAQAPFGVFPVGTAPGAMDYTATSSKVCPNNQADDPSSLASRIAHRRVARIKRNLNGGLFRPDPYDDSVVDDIASLDPRLKILQTRTEYRSDAAACMQTSAEELFDMRDDGAVYSGANALS
Ga0228561_101635	Ga0228561_1016351	F076751	MPDLTFSELPIDRNPLTKKPTSETWEQGIVMSRAEQTRNRMPNVTLSQAEAVAKAAIQRGKEPMDAGFWYHQPVGGRAQEARPRQPVDKNTRGGLGSKANESNVDLVVFGHEQDGAGVSEGEHWEMDQRDWLGFKKRVGGMDANNAVVDAVVFGHDQDGFTSIKKLEEEMKKLPQFAGAAGVCSSEVSSSNIMQDAKIVPSKFTKLKNSSDVDMVVFGHDQDGSGEGPNQDMEDLEASPLFFGSAGVHTTDASLKEAAMWYGGPKGRRTTPLQHSSSSTDQSFQEMQDGPGCPQARFKGSHAFAGAAGNVGTPSALPANSDGTIAWASRKVNRPTDVMQDDFAAKDLDFRTERGAGANALPV
Ga0228561_101774	Ga0228561_1017742	F069666	GDAAVAGRMLPGLARLHGYGHVVDVAAVRAADLQCEMVGDWRRPSLLHGAAKDALNSCITGEGEPPLRLTIAAVACAGSGVICGIPVQQLREDSVEVLNLFDRGLHAPAAMLVAYLIPATSVLKNCKLLKNRFDVESAKKLTKMGMEKSIMLSGLTCDRTAANFMNEGLQPADAILIASDLQVVTTLYLSGNNIGTRVPSRSRRR
Ga0228561_102374	Ga0228561_1023741	F035605	EQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLDKLSSFYELVSAGRVFLEIDQWLNALTEKLLFSDLNIDGYW
Ga0228561_102565	Ga0228561_1025651	F047450	YFPLWEKDVFEVMQAVFPDLTNIFAHYAKSIGGSTTAEDAVEMTMSEFKDFVKDVSLETQHLRFDVMMNMFKKANATNSNEAHFQRKAEQGTAAAKEVGAGSTSKALVVATKTKSAASQKDTEMDAELVLYEFVEVLIRISFWRANPYHGIHKLATKLIPLPDCLVQMLQEVVLPNAKRDDSAIFKEKLKNDKSMQEALDSCEASLKVWFEVHTQSMFLQGKGRKMKFDQWQELLKKGWGQMQSNNEPQPGFTPPKQVGSWQIYQDSEITGDERCRNIFKVSLSMPQAKFAFIDSQNPDQLGVGQQTADSASTTLEFDEFKEC
Ga0228561_102678	Ga0228561_1026781	F005228	SSAMADEGMAEAKKTIVASGYKQVGSRATPEAITKEIKKLPAASGMLDSRKRALHDLAHALAYVQENHKETVCNNCKTEQCVFHLIMLLNDIDAAPALPASEDVIRVGRRVLGMGPMDARLYVLSCFVNLAYLGGAGQLRLPPDGVDKSAMEVLFDTLLLTQESESVLFYSVAGLYNLSNDASFAQMAATKKGVLAKLHSLAESANPDTVKYASGTVDNWRKHHSGAWPPQ
Ga0228561_103101	Ga0228561_1031011	F007565	LPCSPRPSPRLPRPLTLARALRRTMGTSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGGEFSAYATRKLVAFGGQGMGV
Ga0228561_103209	Ga0228561_1032091	F102393	PPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228561_103295	Ga0228561_1032951	F042134	RQDIVGEWEIEQMSEITGDESTKGNIKMRLSIPTCKAAFMDSQSTEQLTVGKGDAVSSASVLDFDEWLECIARMAVAKYSAVKQMENSQKVKAFCMNFFGEASEEDCMRQATYIRAVRYDVSESQPLKDETPEEHAAFLAEFKQLDLMGLYGFPLWEAEVHDLLHANFKELASIFRSYCKSLGETATSDSSRTMDMEEFHDFVIDCGLETKLAIMKGAEPAVYTFNQMKECFTKADKSGKGLAGPAANSELVLYEFLNVITRVSFGRINPEYGELTMEHQDTLLPVPQ
Ga0228561_103411	Ga0228561_1034111	F028443	GSKYNKKDLTPVPESTQILLEECILPNARRDTSGEFKKVLQADAATQGVLTEYRDRLQAWLRPILRKERSTLNPNPKITYKRWVELMDGPDADTQGARGAKPPCPKMVGEWYLSQESQITGDERTAKKNQMTFKAKLSIPQCRWNFLRSQSVEQVEGGEVDADSSDIATLDFSELLECICRCAVNMYEHMLTTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLWCQCWENMVLVDIHHFPLWEKGVHDTL
Ga0228561_104738	Ga0228561_1047381	F074888	YSYLGRQAQREAISTLPKEVLYDFELLRQFELSGQSHTSEAQCELIQRLFPRLSASQVAKLQERRVWSAPWQLGSSYLGAPDVVVTAEKAREWQRMFDHATAFCEELFGEKVNMDGVRPSTMTCLALETLPLPVYDIMAM
Ga0228561_104930	Ga0228561_1049301	F007736	LTVIGTFTCMQGSDIVGDDRVGTEFNCRLSVPQAKAAFVNGQKEVGGGEDVSLDFEELLECIARCGVDKYRPINEITTGGKVAAMIANILGDLNEEQVIKKATYIHAERYEPQGDAAWVALWRKLNLSTLPGFPLWEKQVHAVLHDKRVALASIFRAYSASSLLGSATDMDMEEFHDFVIEANLITDKYGFDTMVGQFTKANAGSNDDVLELHEFLTMLVRISFFRANPQYGMR
Ga0228561_105152	Ga0228561_1051521	F030342	KPLPGQTLAAHRKWLDCWQNIEIGDLHYFPLWEKGVFDCLQECFQDLTNIFAHYAKSIGGSTTAEDAVEMTMTEFKELVKDVGLETKDLKFDVMSNMFKKANATNSGDVRKQRMVEKGNADAQGEFAMNTGTQMALKKNIQQASPKRNAKLNKIRDDELDQELVLYEFVEVMIRIGFWRANPFHGINKLAAKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDK
Ga0228561_105222	Ga0228561_1052221	F053251	TLDFCFRSTSRTRVGTSRRNLHVLKLAMKEGCARATLAEEQEEAPTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSEEPSLFQLIQLIEDALYLDAPIALKHIQRAIASQLNGKRAPELCALIGAGGDFGSAEEHGPPNAEPAFVPEDVVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLV
Ga0228561_106390	Ga0228561_1063901	F039928	RTFYAMSYNGREALGLGMKTRDGGIMNGGLKEGSKEDLRRFGTSQIAMESANDIQQRKQPVASMMDSGVTRDEDGIDRVPDPPATLLPYLQQFKIIARGEGIDLNTAMMDAGGTRYGTIPTQKFCAKLTDIYKRFVFSEQLLFSLACAYGTGCEDIRQGGFELVAWKDFVEDVMKQGNDHAQKF
Ga0228561_106719	Ga0228561_1067191	F080772	PKPGSKLRARIKDPGLDPVIAMTRERHKKELQIEAQKLVVSGLTGAVLHKMLELKAVEREILELTEGVQEYQDQIDLLNDRKHDVQKNQVEKAAWCATFDKLIGPFEAKYEECKGEVKVSFDYAKSKYAISLQQLIDDFGFNPTYKRWFDEF
Ga0228561_107244	Ga0228561_1072441	F069666	QPVPTQLGEITDLDVEQLIEAGRPGDAAAAGRILPGLARLHGYGYVVDVAAVRAANLRNSLGDRTGILGGTAKAVLNSCISGEGEPPLRLTIAAIACAGSGVICGIPVQQMREDSVTTLDLSGRGLHVHVAMLVAYLLPATSVLKNCKLLKYRYNLGIQPAMMLAKIGAERGIMLSGIMLTDQKEADL
Ga0228561_107342	Ga0228561_1073421	F028693	CQMTKSASRSQSDIAKIIDLAESRLISTTPGSVPPHFDDGGHLPFGGTIGNTRGPSAFGRRKATRANAIGNPQALLLNFPPQNGPAQLACWERNYKSSIYMDPSAEGERLNTTNWTVGLQGKPTEPSYLALAQQTWGNLRQTACTRPTVAPAFIPPKRDATAEQVAAASYSWKWPEREQRPAAPQIK
Ga0228561_107507	Ga0228561_1075071	F086468	LLGEPRLKNGLTYYPGVLTDDGSVILGNIVRLQLMAEGSQPYIGYGFLKGLWLWRDQPYMRVQYMAPTRMDLPRDAIAYRAAPDASGIPELMVTNRVGDLHLNALLGPVYIEGSPLMGQLFQENVGASADGFILMRHLDPAVQRVQPLDEAFRLTPIVQAFPKTVLRAMLVPLASSKAPELRVP
Ga0228561_108275	Ga0228561_1082751	F076132	NDKPQWARDAAAPKKVKGTALGEEAKKDAELVLYEFLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVLDDSEGKGLVSDKLGFDEWLRVLDRQDIVGEWEIEQMSEITGDESTKGNIKMRLSI