3300031188: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_3 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031188
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267099 | Ga0228578
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_3 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9959419
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	7
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000254	Metagenome / Metatranscriptome	1450	Y
F008291	Metagenome / Metatranscriptome	335	Y
F013853	Metagenome / Metatranscriptome	267	N
F027998	Metagenome / Metatranscriptome	193	Y
F053251	Metagenome / Metatranscriptome	141	N
F063376	Metagenome / Metatranscriptome	129	Y
F066385	Metagenome / Metatranscriptome	126	N
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F076132	Metagenome / Metatranscriptome	118	Y
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228578_100032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	5525
Ga0228578_101428	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1137
Ga0228578_102105	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	945
Ga0228578_102409	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	886
Ga0228578_103129	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	775
Ga0228578_104622	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	629
Ga0228578_104691	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	624
Ga0228578_104797	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	617
Ga0228578_105742	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	559
Ga0228578_105944	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	548
Ga0228578_106972	All Organisms → cellular organisms → Eukaryota	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228578_100032	Ga0228578_1000321	F027998	LDLYYPRRILSDELTNTKAAEIGITTIITARKTLLRNALNEGVI
Ga0228578_101428	Ga0228578_1014282	F000254	MAKFDLASALTRKETRTMRKMEFMIPYWMARCPNRGWKESPEYFKAEELREKMAVMEAKAKKRWEANFC
Ga0228578_102105	Ga0228578_1021051	F102393	MILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228578_102114	Ga0228578_1021141	F013853	WKGTSLGVLQEGAGIFLWDVPMADSEPLNVPMSLAPSITTNASFCKWSKVASQLAIGTTQGKVIIFNKAEGVMQLHEKKGKHGAPVTCGDWLFDNRLGLASGLRVKISQPIAETGSKWESYSKFRLGGMLSKVPRHIRVAGDPNRLAFTLNYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGVIAGFQWLPNLVLLVGLTNGYMVTVDFGALIKLQQSNKLPDRVSAMGTSRVFNEYLQDVSAFYTANVGQRVACCGDTMVKIVHRTGVELEVHLEVDLDRQAKIGHYLDKVDWDDSAKAFACSATDGFL
Ga0228578_102409	Ga0228578_1024091	F066385	NQKPEPAFTYIMATTAIRELQMAALPAAVGTVAILYSNLANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
Ga0228578_103129	Ga0228578_1031291	F053251	MRASSAEEQEEAPTAKKAKHEEQIRVHARDGEEVTLSQDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSEEPSLFQLIQLIEDALYLDAPIALKHIQRAIASRLNGKRAPVLGALIGAVGDFGSAEEHASHAAPVDG
Ga0228578_104622	Ga0228578_1046221	F074330	RNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRIN
Ga0228578_104691	Ga0228578_1046911	F076132	FLNMLVRISFWRANPNFGLHGNKDELVPVALALSTVLNEIILPRAKRENSAAFRNKEMNDPKLLAVLENYKPKLKEWYDKKVSDDSEGPRNGIISDKLGFEEWNRVLDRQDIVGEWEIEQMSEITGDESTKGNIKVRLSIPTCKAAFMDSQNAEQLGVGQADSTSEQAVLDFDEWLECIARIACSKYSAIKQMDPAAKVKAFLQNFFG
Ga0228578_104797	Ga0228578_1047971	F008291	QIASASLANDVNNLRRAVAKVEVIPEEDAKVWSFQGASGRRVLVDRRAPAPMPYGNARYTASSWKVGARSTEVHPITGQHTYDTGNLYRTVHWKDEGFGLNGRFTDAIALAGMWRNDGLNTAATRSKAVSDPTGWGTPKDNISFM
Ga0228578_105742	Ga0228578_1057421	F074505	MRRYPRCPGAICCPARRALRAVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228578_105944	Ga0228578_1059441	F104431	MVPTQLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLPRKHKVCASCVCTRG
Ga0228578_106972	Ga0228578_1069721	F063376	KAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKE